PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lj0g3v0363619.1

Organism

Lotus japonicus

Taxonomic ID

34305

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus

Family

Dof

Protein Properties

Length: 296aa MW: 32328.6 Da PI: 8.8896

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Lj0g3v0363619.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	125.8	1.4e-39	41	100	2	61
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 k++al+cprC+stntkfCyynnyslsqPryfCk+CrryWt+GG+lrnvPvGgg+rknk+s Lj0g3v0363619.1 41 KDQALNCPRCNSTNTKFCYYNNYSLSQPRYFCKTCRRYWTEGGSLRNVPVGGGSRKNKRS 100 7899******************************************************87 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	5.0E-30	37	99	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	6.4E-34	42	99	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.264	45	99	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	47	83	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 296 aa Download sequence Send to blast
MDTAQWAQGN IGGVVKPMEG SNSKANINNN PMLERRARPQ KDQALNCPRC NSTNTKFCYY 60 NNYSLSQPRY FCKTCRRYWT EGGSLRNVPV GGGSRKNKRS TPSSASTPAS SSTPLSSTIN 120 KAPLNFPQSA SQNPKIHQGQ DLNLAYPPPP EDYNTISKFM EVPYNNNENN QHIQNTTPSS 180 TTPSHLELLK TGITSSSRGL NNSFIPMNLS DSSTMYNSSG FPLQDFKPGL NFSLEGFENG 240 YGGLQGIQEG GSGGARILFP VEELKQQVPN SGEFEQNRSQ GDSAGYWNGM LGGGSW

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Lj0g3v0363619.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT096797	1e-79	BT096797.1 Soybean clone JCVI-FLGm-21O11 unknown mRNA.
GenBank	DQ857271	1e-79	DQ857271.1 Glycine max Dof21 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027338695.1	1e-149	dof zinc finger protein DOF4.6-like
TrEMBL	A0A1S3VF18	1e-138	A0A1S3VF18_VIGRR; dof zinc finger protein 1 isoform X1
STRING	XP_007136465.1	1e-137	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF674	34	137

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G61850.4	7e-49	Dof family protein