PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lj0g3v0358659.1

Common Name

nin

Organism

Lotus japonicus

Taxonomic ID

34305

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus

Family

Nin-like

Protein Properties

Length: 878aa MW: 97004.6 Da PI: 5.5706

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Lj0g3v0358659.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	92.1	4.1e-29	570	621	1	52
RWP-RK 1 aekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 aek+isl++l++yF++++kdAAk++gvc+T+LKriCRq+GI RWP+Rkik++ Lj0g3v0358659.1 570 AEKTISLQVLRQYFAGSLKDAAKSIGVCPTTLKRICRQHGITRWPSRKIKKV 621 589***********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	17.53	560	641	IPR003035	RWP-RK domain
Pfam	PF02042	9.1E-25	573	621	IPR003035	RWP-RK domain
SuperFamily	SSF54277	1.86E-23	770	865	No hit	No description
Gene3D	G3DSA:3.10.20.240	3.8E-23	779	860	No hit	No description
PROSITE profile	PS51745	23.264	780	863	IPR000270	PB1 domain
SMART	SM00666	4.4E-28	780	863	IPR000270	PB1 domain
Pfam	PF00564	4.9E-15	781	862	IPR000270	PB1 domain
CDD	cd06407	1.80E-42	781	862	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 878 aa Download sequence Send to blast
MEYGSLLVQQ QQQQDCNSAY GSLSNLSSDC GSVTTAEADH HIIEELLVQG CWVEVSGVGV 60 REGELQLQQD ESSFVVGKRW WIGPAAAVAG SCNSSVKERL VIAVGYLKDY TRNSNVLIQI 120 WVPLRRGILH DHDYHTNYLL SNNPPPQPEA AADHESVSLG FPMPAAPNSN LYSNVHVRFF 180 RSHEYPRVQA QQYGSLALPV FERGTGTCLG VLEIVITNQT TINYNVSNAL DQAVDFRSSQ 240 SFIPPAIKVY DELYQAAVNE IIEVMTSVCK THNLPLALTW APCIQQGKCG CGVSSENYMW 300 CVSTVDSACF VGDLDILGFQ EACSEYHLFR GQGIVGTAFT TSKPCFAIDI TAFSKAEYPL 360 AHHANMFGLH AAVAIPLRSV YTGSAADFVL EFFLPKDCHD SEEQKQLLNS LSMVVQQACR 420 SLHVVLVEDE YTLPMPSHTS KEELEEEEIT ITNNHEQKLF VSPSSHESEC SKESSWIAHM 480 MEAQQKGKGV SVSLEYLEEP KEEFKVTTNW DSSTDHDQQA QVFSSDFGQM SSGFKASTVE 540 GGDQESSYTF GSRRSSSGGR KSGEKRRTKA EKTISLQVLR QYFAGSLKDA AKSIGVCPTT 600 LKRICRQHGI TRWPSRKIKK VGHSLKKLQL VIDSVQGAEG AIQIGSFYAS FPELSSSDFS 660 ASCRSDSSKK MHNYPDQNNT LYGHGDHGGV VTSLKSPPSA CSQTFAGNQP CTIINNGDVL 720 MTESPPVPEA LLSRRDHCEE AELLNNASIQ EDTKRFSRPK SQTLPPLSDS SGWNSLETGA 780 FRVKATFADE KIRFSLQPIW GFSDLQLEIA RRFNLNDVTN ILLKYLDDDG EWVVLACDGD 840 LEECKDIHRS SQSRTIRLSL FQASPLNLAN TFRNSSPS

Sequence ? help Back to Top

Protein Sequence Length: 878 aa Download sequence Send to blast

MEYGSLLVQQ QQQQDCNSAY GSLSNLSSDC GSVTTAEADH HIIEELLVQG CWVEVSGVGV  60
REGELQLQQD ESSFVVGKRW WIGPAAAVAG SCNSSVKERL VIAVGYLKDY TRNSNVLIQI  120
WVPLRRGILH DHDYHTNYLL SNNPPPQPEA AADHESVSLG FPMPAAPNSN LYSNVHVRFF  180
RSHEYPRVQA QQYGSLALPV FERGTGTCLG VLEIVITNQT TINYNVSNAL DQAVDFRSSQ  240
SFIPPAIKVY DELYQAAVNE IIEVMTSVCK THNLPLALTW APCIQQGKCG CGVSSENYMW  300
CVSTVDSACF VGDLDILGFQ EACSEYHLFR GQGIVGTAFT TSKPCFAIDI TAFSKAEYPL  360
AHHANMFGLH AAVAIPLRSV YTGSAADFVL EFFLPKDCHD SEEQKQLLNS LSMVVQQACR  420
SLHVVLVEDE YTLPMPSHTS KEELEEEEIT ITNNHEQKLF VSPSSHESEC SKESSWIAHM  480
MEAQQKGKGV SVSLEYLEEP KEEFKVTTNW DSSTDHDQQA QVFSSDFGQM SSGFKASTVE  540
GGDQESSYTF GSRRSSSGGR KSGEKRRTKA EKTISLQVLR QYFAGSLKDA AKSIGVCPTT  600
LKRICRQHGI TRWPSRKIKK VGHSLKKLQL VIDSVQGAEG AIQIGSFYAS FPELSSSDFS  660
ASCRSDSSKK MHNYPDQNNT LYGHGDHGGV VTSLKSPPSA CSQTFAGNQP CTIINNGDVL  720
MTESPPVPEA LLSRRDHCEE AELLNNASIQ EDTKRFSRPK SQTLPPLSDS SGWNSLETGA  780
FRVKATFADE KIRFSLQPIW GFSDLQLEIA RRFNLNDVTN ILLKYLDDDG EWVVLACDGD  840
LEECKDIHRS SQSRTIRLSL FQASPLNLAN TFRNSSPS

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Lja.2214	0.0	root

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Lj0g3v0358659.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AJ239041	0.0	AJ239041.1 Lotus corniculatus var. japonicus mRNA for nodule inception protein (nin).

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027368635.1	0.0	protein NLP2-like
TrEMBL	Q9S7B1	0.0	Q9S7B1_LOTJA; Nodule inception protein
STRING	XP_004491641.1	0.0	(Cicer arietinum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1237	33	99

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G17150.1	0.0	Nin-like family protein

Publications ? help Back to Top
Schauser L,Roussis A,Stiller J,Stougaard J A plant regulator controlling development of symbiotic root nodules. Nature, 1999. 402(6758): p. 191-5 [PMID:10647012] Schauser L,Wieloch W,Stougaard J Evolution of NIN-like proteins in Arabidopsis, rice, and Lotus japonicus. J. Mol. Evol., 2005. 60(2): p. 229-37 [PMID:15785851]