PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj0g3v0357169.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family ERF
Protein Properties Length: 224aa    MW: 25172.9 Da    PI: 4.4726
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj0g3v0357169.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2605.6e-1956106155
              AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                      + y+GVr++  +++Wv+e r+p++   +kr++lg+f t+e+Aa+a++ a+++l+g
  Lj0g3v0357169.1  56 PVYRGVRQRN-SNKWVCEMRVPND---TKRIWLGTFPTPEMAARAHDVAALALRG 106
                      68*****999.7*********944...4*************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.8E-1356106IPR001471AP2/ERF domain
SMARTSM003804.8E-2657120IPR001471AP2/ERF domain
PROSITE profilePS5103220.94357114IPR001471AP2/ERF domain
SuperFamilySSF541716.54E-2157116IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.105.7E-3057116IPR001471AP2/ERF domain
CDDcd000183.28E-2858116No hitNo description
PRINTSPR003675.6E-85869IPR001471AP2/ERF domain
PRINTSPR003675.6E-88096IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 224 aa     Download sequence    Send to blast
MSLFNSTFDE FNYGYQSPET SSYTTTTTRS EEEVVLASAR PKKRAGRRVF KETRHPVYRG  60
VRQRNSNKWV CEMRVPNDTK RIWLGTFPTP EMAARAHDVA ALALRGQSAC LNFADSAWLL  120
TVPASTDADE IRRAAVAAAE SFAPGNEVME DANQTLQQQQ QEQEQGMMYG EEEVAAAVPE  180
FEDFHDLLMS IANGPLLSPP PPARDGRDWN DVEMFDDGVS LWNF
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates cold or dehydration-inducible transcription. CBF/DREB1 factors play a key role in freezing tolerance and cold acclimation. {ECO:0000269|PubMed:11798174}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj0g3v0357169.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By high-salt stress. {ECO:0000269|PubMed:11798174}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003517455.11e-90dehydration-responsive element-binding protein 1E
RefseqXP_028247019.11e-90dehydration-responsive element-binding protein 1E-like
SwissprotQ9LN862e-59DRE1F_ARATH; Dehydration-responsive element-binding protein 1F
TrEMBLA0A445M6D53e-89A0A445M6D5_GLYSO; Dehydration-responsive element-binding protein 1F
TrEMBLB3TPR93e-89B3TPR9_SOYBN; CBF3 protein
STRINGGLYMA01G42500.25e-90(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF24333224
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G12610.15e-41ERF family protein
Publications ? help Back to Top
  1. Kazama D,Kurusu T,Mitsuda N,Ohme-Takagi M,Tada Y
    Involvement of elevated proline accumulation in enhanced osmotic stress tolerance in Arabidopsis conferred by chimeric repressor gene silencing technology.
    Plant Signal Behav, 2014. 9(3): p. e28211
    [PMID:24614501]
  2. Kazama D, et al.
    Identification of Chimeric Repressors that Confer Salt and Osmotic Stress Tolerance in Arabidopsis.
    Plants (Basel), 2013. 2(4): p. 769-85
    [PMID:27137403]
  3. Song GQ,Gao X
    Transcriptomic changes reveal gene networks responding to the overexpression of a blueberry DWARF AND DELAYED FLOWERING 1 gene in transgenic blueberry plants.
    BMC Plant Biol., 2017. 17(1): p. 106
    [PMID:28629320]
  4. Imran QM, et al.
    Transcriptome profile of NO-induced Arabidopsis transcription factor genes suggests their putative regulatory role in multiple biological processes.
    Sci Rep, 2018. 8(1): p. 771
    [PMID:29335449]