PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj0g3v0356659.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family MYB
Protein Properties Length: 218aa    MW: 25148.9 Da    PI: 6.5107
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj0g3v0356659.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding54.42.9e-171461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+W++eEd++l  +v++ G+++W+  +++ g+ R++k+c++rw +yl
  Lj0g3v0356659.1 14 KGAWSEEEDKILSAYVERCGNPNWRQLPKYAGLARCGKSCRLRWMNYL 61
                     79********************************************97 PP

2Myb_DNA-binding53.36.5e-1767111147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      rg+ T+ E++ + d++k++G++ W++Ia++++ gRt++++k++w+++
  Lj0g3v0356659.1  67 RGSYTQKEEQTIMDLHKKYGNK-WSLIAEKLP-GRTDNEIKNYWHSH 111
                      8999******************.*********.***********987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.7E-21963IPR009057Homeodomain-like
PROSITE profilePS5129416.369961IPR017930Myb domain
SuperFamilySSF466893.03E-2911108IPR009057Homeodomain-like
SMARTSM007174.9E-121363IPR001005SANT/Myb domain
PfamPF002491.5E-151461IPR001005SANT/Myb domain
CDDcd001671.45E-91661No hitNo description
PROSITE profilePS5129425.562116IPR017930Myb domain
Gene3DG3DSA:1.10.10.605.4E-2664115IPR009057Homeodomain-like
SMARTSM007171.8E-1566114IPR001005SANT/Myb domain
PfamPF002491.8E-1567111IPR001005SANT/Myb domain
CDDcd001671.08E-1069112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 218 aa     Download sequence    Send to blast
MVRAPYFDAN GVKKGAWSEE EDKILSAYVE RCGNPNWRQL PKYAGLARCG KSCRLRWMNY  60
LRPNLKRGSY TQKEEQTIMD LHKKYGNKWS LIAEKLPGRT DNEIKNYWHS HVKKLLKRNE  120
TTSSDAASAD SHHILESTIS MSSEMPCYTE NNSPASFSSV HTESNVSFTR EEDDIASWGT  180
LDGLNSSFWT EPFITENAFN QNYFPNSCYE AEDTFVIW
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A7e-25141147106B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj0g3v0356659.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027348207.11e-109transcription factor MYB8-like
TrEMBLA0A371ERQ21e-102A0A371ERQ2_MUCPR; Transcription factor MYB4
STRINGGLYMA06G45520.18e-98(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF35633186
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G31180.13e-56myb domain protein 14