PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lj0g3v0356659.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
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Family | MYB | ||||||||
Protein Properties | Length: 218aa MW: 25148.9 Da PI: 6.5107 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 54.4 | 2.9e-17 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+W++eEd++l +v++ G+++W+ +++ g+ R++k+c++rw +yl Lj0g3v0356659.1 14 KGAWSEEEDKILSAYVERCGNPNWRQLPKYAGLARCGKSCRLRWMNYL 61 79********************************************97 PP | |||||||
2 | Myb_DNA-binding | 53.3 | 6.5e-17 | 67 | 111 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg+ T+ E++ + d++k++G++ W++Ia++++ gRt++++k++w+++ Lj0g3v0356659.1 67 RGSYTQKEEQTIMDLHKKYGNK-WSLIAEKLP-GRTDNEIKNYWHSH 111 8999******************.*********.***********987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.7E-21 | 9 | 63 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 16.369 | 9 | 61 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 3.03E-29 | 11 | 108 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 4.9E-12 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.5E-15 | 14 | 61 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.45E-9 | 16 | 61 | No hit | No description |
PROSITE profile | PS51294 | 25.5 | 62 | 116 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 5.4E-26 | 64 | 115 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.8E-15 | 66 | 114 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.8E-15 | 67 | 111 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.08E-10 | 69 | 112 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 218 aa Download sequence Send to blast |
MVRAPYFDAN GVKKGAWSEE EDKILSAYVE RCGNPNWRQL PKYAGLARCG KSCRLRWMNY 60 LRPNLKRGSY TQKEEQTIMD LHKKYGNKWS LIAEKLPGRT DNEIKNYWHS HVKKLLKRNE 120 TTSSDAASAD SHHILESTIS MSSEMPCYTE NNSPASFSSV HTESNVSFTR EEDDIASWGT 180 LDGLNSSFWT EPFITENAFN QNYFPNSCYE AEDTFVIW |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 7e-25 | 14 | 114 | 7 | 106 | B-MYB |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lj0g3v0356659.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027348207.1 | 1e-109 | transcription factor MYB8-like | ||||
TrEMBL | A0A371ERQ2 | 1e-102 | A0A371ERQ2_MUCPR; Transcription factor MYB4 | ||||
STRING | GLYMA06G45520.1 | 8e-98 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF356 | 33 | 186 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G31180.1 | 3e-56 | myb domain protein 14 |