PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lj0g3v0352409.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
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Family | NAC | ||||||||
Protein Properties | Length: 300aa MW: 34763.5 Da PI: 8.9038 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 164.4 | 4.1e-51 | 23 | 151 | 2 | 128 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 pGfrFhPtdeelv +yLk+kv +k+l++ + ik+vdiyk++PwdLpk + ++kewyfF+kr +ky+++ r+nr+tksg+Wkatg dk ++s Lj0g3v0352409.1 23 LPGFRFHPTDEELVGFYLKRKVGKKPLRI-DLIKQVDIYKYDPWDLPKVNSVGDKEWYFFCKRGRKYRNSIRPNRVTKSGFWKATGIDKVIYSV 115 69***************************.99***************7666799*************************************998 PP NAM 96 ...kgelvglkktLvfykgrapkgektdWvmheyrl 128 +++ +glkk+Lv+y+g+a kg+ktdW+mhe+rl Lj0g3v0352409.1 116 kepHHQSIGLKKSLVYYRGSAGKGTKTDWMMHEFRL 151 7888889***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 2.09E-56 | 15 | 178 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 53.823 | 22 | 179 | IPR003441 | NAC domain |
Pfam | PF02365 | 4.1E-26 | 24 | 151 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 300 aa Download sequence Send to blast |
MDVVQLHTLS ETDDKMKEEE VVLPGFRFHP TDEELVGFYL KRKVGKKPLR IDLIKQVDIY 60 KYDPWDLPKV NSVGDKEWYF FCKRGRKYRN SIRPNRVTKS GFWKATGIDK VIYSVKEPHH 120 QSIGLKKSLV YYRGSAGKGT KTDWMMHEFR LPPNNPHDAN ASNDVQEAEV WTLCRIFKRI 180 TPYKKYTPNL KDSAADTKPN PETSIDSDNC KSFMQQVEMK PIFGFVDQNK QLLLGQFGSV 240 ALPGVPSTLP YPSSWNQNIV EDTIFANQNW DDLRSAIQFA NDPSKVYDNF IETYIPPYFS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3swm_A | 9e-49 | 24 | 185 | 22 | 174 | NAC domain-containing protein 19 |
3swm_B | 9e-49 | 24 | 185 | 22 | 174 | NAC domain-containing protein 19 |
3swm_C | 9e-49 | 24 | 185 | 22 | 174 | NAC domain-containing protein 19 |
3swm_D | 9e-49 | 24 | 185 | 22 | 174 | NAC domain-containing protein 19 |
3swp_A | 9e-49 | 24 | 185 | 22 | 174 | NAC domain-containing protein 19 |
3swp_B | 9e-49 | 24 | 185 | 22 | 174 | NAC domain-containing protein 19 |
3swp_C | 9e-49 | 24 | 185 | 22 | 174 | NAC domain-containing protein 19 |
3swp_D | 9e-49 | 24 | 185 | 22 | 174 | NAC domain-containing protein 19 |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in roots, root caps, cotyledons, tips and margin of young leaves, senescent regions of fully expanded leaves and floral tissues, including old sepals, petals, staments, mature anthers and pollen grains. Not detected in the abscission zone of open flowers, emerging lateral roots and root meristematic zones. {ECO:0000269|PubMed:22345491}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that binds to the 5'- RRYGCCGT-3' consensus core sequence. Central longevity regulator. Negative regulator of leaf senescence. Modulates cellular H(2)O(2) levels and enhances tolerance to various abiotic stresses through the regulation of DREB2A. {ECO:0000269|PubMed:22345491}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lj0g3v0352409.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated by H(2)O(2), paraquat, ozone, 3-aminotriazole and salt stress. {ECO:0000269|PubMed:22345491}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003551931.1 | 1e-154 | transcription factor JUNGBRUNNEN 1 | ||||
Swissprot | Q9SK55 | 1e-84 | NAC42_ARATH; Transcription factor JUNGBRUNNEN 1 | ||||
TrEMBL | A0A0R0EYY2 | 1e-153 | A0A0R0EYY2_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA18G13574.1 | 1e-154 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1013 | 34 | 112 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G43000.1 | 6e-87 | NAC domain containing protein 42 |