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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lj0g3v0351859.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
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Family | C2H2 | ||||||||
Protein Properties | Length: 460aa MW: 51388.6 Da PI: 7.7963 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 16.6 | 2.3e-05 | 6 | 28 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C+ C+k F r nL+ H r H Lj0g3v0351859.1 6 FICEVCNKGFQREQNLQLHRRGH 28 89*******************88 PP | |||||||
2 | zf-C2H2 | 13.2 | 0.00026 | 83 | 105 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC++C+k + +s+ k H +t+ Lj0g3v0351859.1 83 WKCEKCPKKYAVQSDWKAHSKTC 105 58*****************9998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 8.51E-8 | 5 | 28 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 4.9E-6 | 5 | 28 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE profile | PS50157 | 10.99 | 6 | 28 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.0052 | 6 | 28 | IPR015880 | Zinc finger, C2H2-like |
Pfam | PF12171 | 2.2E-5 | 6 | 28 | IPR022755 | Zinc finger, double-stranded RNA binding |
PROSITE pattern | PS00028 | 0 | 8 | 28 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 160 | 48 | 78 | IPR015880 | Zinc finger, C2H2-like |
Gene3D | G3DSA:3.30.160.60 | 1.8E-4 | 71 | 104 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 8.51E-8 | 78 | 103 | No hit | No description |
SMART | SM00355 | 130 | 83 | 103 | IPR015880 | Zinc finger, C2H2-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 460 aa Download sequence Send to blast |
MATNRFICEV CNKGFQREQN LQLHRRGHNL PWKLKQKNSK DQAKRKVYLC PEPTCVHHDP 60 SRALGDLTGI KKHFSRKHGE KKWKCEKCPK KYAVQSDWKA HSKTCGTKEY RCDCGTLFSR 120 RDSFITHRAF CDAPAQENNT SQPPNNMSSA ISSQLYGSSS NNNHMSLALS QMCPQIHHQT 180 NNNNQSASDL LHFGGANIAK TEESNHNFPS TPSLGFSFKP SLYQTPSSMF FMPPESNQNQ 240 NYHHFGGTDS KPFQGLIQLS ELHNNNSSFS EHFNIYNIEG SSFFSEGTCS VMGDHHQHHQ 300 FQTSSTTVPS LFSSTFLHSS NITPHLSATA MLQKAAQMAA SSSNNTSSSS DHKPNYGNMQ 360 DQMMNSSIFG ASDDHDYGLK EEEPKHLQKM MSAGGSERLS TRDFLGVGQD HVVRSLSEGV 420 SEEDPQQQQQ HGFFNLSSLE AERNGSRATG QCFGDGGNFQ |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3h_C | 3e-32 | 79 | 137 | 3 | 61 | Zinc finger protein JACKDAW |
5b3h_F | 3e-32 | 79 | 137 | 3 | 61 | Zinc finger protein JACKDAW |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Lja.1319 | 1e-132 | flower| pod| root |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that may act a transcriptional activator of nuclear-encoded photosynthetic gene expression (Probable). Binds DNA via its zinc fingers (PubMed:24821766). Recognizes and binds to SCL3 promoter sequence 5'-AGACAA-3' to promotes its expression when in complex with RGA (PubMed:24821766). {ECO:0000269|PubMed:24821766, ECO:0000305|PubMed:19726569}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lj0g3v0351859.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Down-regulated by gibberellin. {ECO:0000305|PubMed:17933900}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015041 | 1e-111 | AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027361491.1 | 1e-160 | protein indeterminate-domain 5, chloroplastic-like isoform X1 | ||||
Refseq | XP_027361492.1 | 1e-160 | protein indeterminate-domain 5, chloroplastic-like isoform X2 | ||||
Refseq | XP_027361494.1 | 1e-160 | protein indeterminate-domain 5, chloroplastic-like isoform X2 | ||||
Refseq | XP_027361495.1 | 1e-160 | protein indeterminate-domain 5, chloroplastic-like isoform X2 | ||||
Swissprot | Q8GYC1 | 3e-97 | IDD4_ARATH; Protein indeterminate-domain 4, chloroplastic | ||||
TrEMBL | A0A1S3VSI0 | 1e-151 | A0A1S3VSI0_VIGRR; protein indeterminate-domain 5, chloroplastic | ||||
STRING | GLYMA07G19540.2 | 1e-149 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1536 | 33 | 97 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G02080.2 | 3e-80 | indeterminate(ID)-domain 4 |
Publications ? help Back to Top | |||
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