PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus

Family

GRAS

Protein Properties

Length: 675aa MW: 76758.2 Da PI: 5.641

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Lj0g3v0347519.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	358.6	9.3e-110	301	672	1	373
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfs 94 l++lL++cA+a+ss+d + a++lL+++++++sp g+ +qRla+yf +AL+arla+++s++y+ l++++ts ++ + a++++s ++P+ k++ Lj0g3v0347519.1 301 LRTLLMQCAQAISSDDISTAKSLLKQIKQHSSPMGNGTQRLAHYFGNALEARLAGTGSQIYRMLSSKRTS---AADMIRAYQVYSLACPFEKLA 391 6789**********************************************************999999...9**************** PP GRAS 95 hltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrl 186 + aN+ I + ++ e++Hi+Df+i++G++Wpa+++ +++Rp+g+p+lRiTg++ ++g ++++etg+rLa+++++++vpfefn+ +a+r+ Lj0g3v0347519.1 392 IMFANNSIWNKAKDVETLHIVDFGIGYGFKWPAFIHRISKRPGGSPKLRITGIELLQPGfrPLQRVHETGKRLASYCNRFNVPFEFNA-IAQRW 484 *****************************************************99999**********************.7 PP GRAS 187 edleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklprese 280 e++++e+L++k++E laVn+ ++ ++llde+v e++r +vL+l+k+ +P ++v+ + +n++ F +rf ea+ +y+alfd l+++l+re+ Lj0g3v0347519.1 485 ETIKVEDLKIKKNEFLAVNCLFRSEKLLDETVVEENPRGAVLDLIKKANPGIFVHGIVNGCYNAPFFSTRFREAVFHYTALFDVLDTNLAREDP 578 ****************************************************************************************** PP GRAS 281 erikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaW 373 r + E+e+ g+e++nvvaceg er+er et+++W+ r++++GF+ +pl++++ ++ + lr k + ++ + +++++gWk+r L++ S+W Lj0g3v0347519.1 579 MRLMFEEEFCGKEVMNVVACEGCERIERPETYKQWQLRIMRSGFRHLPLDDQIINKLRGRLRDDKyNSDIILQVDGNWVLQGWKGRILYASSCW 672 *********************************************************9988788899********************* PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	62.709	275	652	IPR005202	Transcription factor GRAS
Pfam	PF03514	3.2E-107	301	672	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 675 aa Download sequence Send to blast
MDDDRVVDPS HCAGKNSAYR DEGSCLGENE SESDQFSSTI LSYINQTLME EEDMEEKYSM 60 FQDSLALKHA EKSLYEAIGQ KYPSSPPPPP PPPTLDNYTT LESPDQSFSS NFSDYSFSSD 120 TSSGTTSGFE FESIECNSFT IPTTLPIPST THYSTNHTSY FTTNNTGLGL DSALLSKSYL 180 VQFERGVEQG TMFLPVQTPF ITYHDNTTLF PSFTNPAPHG VIKSESHEEE HFLGRRHRKQ 240 EDEDEDEAEE QHRRSTKRSE AYIDDTELSE LFDKLLVQGT RLGNNSSPYM RQGKTEEVVN 300 LRTLLMQCAQ AISSDDISTA KSLLKQIKQH SSPMGNGTQR LAHYFGNALE ARLAGTGSQI 360 YRMLSSKRTS AADMIRAYQV YSLACPFEKL AIMFANNSIW NKAKDVETLH IVDFGIGYGF 420 KWPAFIHRIS KRPGGSPKLR ITGIELLQPG FRPLQRVHET GKRLASYCNR FNVPFEFNAI 480 AQRWETIKVE DLKIKKNEFL AVNCLFRSEK LLDETVVEEN PRGAVLDLIK KANPGIFVHG 540 IVNGCYNAPF FSTRFREAVF HYTALFDVLD TNLAREDPMR LMFEEEFCGK EVMNVVACEG 600 CERIERPETY KQWQLRIMRS GFRHLPLDDQ IINKLRGRLR DDKYNSDIIL QVDGNWVLQG 660 WKGRILYASS CWVPA

Sequence ? help Back to Top

Protein Sequence Length: 675 aa Download sequence Send to blast

MDDDRVVDPS HCAGKNSAYR DEGSCLGENE SESDQFSSTI LSYINQTLME EEDMEEKYSM  60
FQDSLALKHA EKSLYEAIGQ KYPSSPPPPP PPPTLDNYTT LESPDQSFSS NFSDYSFSSD  120
TSSGTTSGFE FESIECNSFT IPTTLPIPST THYSTNHTSY FTTNNTGLGL DSALLSKSYL  180
VQFERGVEQG TMFLPVQTPF ITYHDNTTLF PSFTNPAPHG VIKSESHEEE HFLGRRHRKQ  240
EDEDEDEAEE QHRRSTKRSE AYIDDTELSE LFDKLLVQGT RLGNNSSPYM RQGKTEEVVN  300
LRTLLMQCAQ AISSDDISTA KSLLKQIKQH SSPMGNGTQR LAHYFGNALE ARLAGTGSQI  360
YRMLSSKRTS AADMIRAYQV YSLACPFEKL AIMFANNSIW NKAKDVETLH IVDFGIGYGF  420
KWPAFIHRIS KRPGGSPKLR ITGIELLQPG FRPLQRVHET GKRLASYCNR FNVPFEFNAI  480
AQRWETIKVE DLKIKKNEFL AVNCLFRSEK LLDETVVEEN PRGAVLDLIK KANPGIFVHG  540
IVNGCYNAPF FSTRFREAVF HYTALFDVLD TNLAREDPMR LMFEEEFCGK EVMNVVACEG  600
CERIERPETY KQWQLRIMRS GFRHLPLDDQ IINKLRGRLR DDKYNSDIIL QVDGNWVLQG  660
WKGRILYASS CWVPA

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_A	1e-53	291	674	8	379	Protein SCARECROW
5b3h_D	1e-53	291	674	8	379	Protein SCARECROW
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Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	252	258	RRSTKRS

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in roots, shoots, flowers and siliques. {ECO:0000269\|PubMed:10341448, ECO:0000269\|PubMed:18500650}.

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in plant development. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Lj0g3v0347519.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019413917.1	0.0	PREDICTED: scarecrow-like protein 14
Swissprot	Q9XE58	0.0	SCL14_ARATH; Scarecrow-like protein 14
TrEMBL	A0A4P1R0Y9	0.0	A0A4P1R0Y9_LUPAN; Uncharacterized protein
STRING	XP_007132057.1	0.0	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF131	34	339

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G07530.1	0.0	SCARECROW-like 14

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]