PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lj0g3v0343449.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
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Family | bHLH | ||||||||
Protein Properties | Length: 640aa MW: 69030 Da PI: 5.4392 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 34.6 | 3.4e-11 | 464 | 509 | 4 | 54 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 +h e+Er+RR+++N++f Lr ++P+ K++Ka+ L A+ +I +L Lj0g3v0343449.1 464 NHVEAERQRREKLNQRFYALRAVVPNV-----SKMDKASLLGDAIAFIEEL 509 799***********************6.....5***************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF14215 | 4.8E-53 | 51 | 236 | IPR025610 | Transcription factor MYC/MYB N-terminal |
PROSITE profile | PS50888 | 16.412 | 460 | 509 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 4.03E-13 | 463 | 514 | No hit | No description |
SuperFamily | SSF47459 | 3.66E-16 | 463 | 529 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 6.5E-17 | 464 | 530 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.1E-8 | 464 | 509 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 2.2E-14 | 466 | 515 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 640 aa Download sequence Send to blast |
MNLWSDDNSS VMEAFMSSSS DLSSLWPHPA VSATATAPGP DAQPMLNPET LQQRLLALIE 60 GAKESWTYAI FWQPSYDYSS GAPLLGWGDG YYKGEEDKDK AKSTKTASSS SAEQDHRKKV 120 LRELNSLISG NTASPDVAVD EEVTDTEWFF LVSMTQSFVN GSGLPGQAYF NSNAVWVSGS 180 DRLSGSACER ARQGHLFGLR TMVCIPTPCA NGVVELASTE VIPHSPDLMN KVRILFNFNN 240 NNLHSNNLDA AGSWPVNSVT AGHGENDSSS LWLNDPSSSG IEIRDSVTVA PAAANNNATV 300 TIGKSLQFQN SSSALTETPS SVHVHTPNGF LPRELNFSSS MKPESGEILS FGESKKNSCT 360 GNGNFFSGQS QSGAVAGAEN KRRSPGARSS VDNGMLSFTS GAILSDSNVK SGVSRGGCGG 420 GDSDHSDIEA SVVKEADSSR LVEPEKKPRK RGRKPANGRE EPLNHVEAER QRREKLNQRF 480 YALRAVVPNV SKMDKASLLG DAIAFIEELN AKVKGAESEK AELEKQLESA KKELEAVSKN 540 PPPPDKEADS NSTSCKLIDL VIDVKIMGWD AMIRIECKKK NHPAVRLMAA LKELDLDLQH 600 ASVTVVNDLM IQQATVNMGS RFYTQEELLL ALSSKVGDPR |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4rqw_A | 6e-78 | 43 | 239 | 1 | 195 | Transcription factor MYC3 |
4rqw_B | 6e-78 | 43 | 239 | 1 | 195 | Transcription factor MYC3 |
4rs9_A | 6e-78 | 43 | 239 | 1 | 195 | Transcription factor MYC3 |
4yz6_A | 6e-78 | 43 | 239 | 1 | 195 | Transcription factor MYC3 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 445 | 453 | KKPRKRGRK |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed at low levels in roots, stems, leaves, flowers and fruits. {ECO:0000269|PubMed:15231736}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that binds to the G-box motif (5'-AACGTG-3') found in the promoter of the jasmonate-induced gene LAPA1 (PubMed:15231736). Acts as negative regulator of blue light-mediated photomorphogenesis and positively regulates root growth (PubMed:24483714). Promotes growth in response to the phytohormones abscisic acid (ABA) and jasmonate (JA) (PubMed:24483714). Binds to the G-box motif (5'-CACGTG-3') of the RBCS-3A gene promoter (PubMed:24483714). Acts downstream of the jasmonate (JA) receptor to orchestrate JA-mediated activation of plant responses (PubMed:28733419). Positively regulates both wound-responsive and pathogen-responsive genes through MYC2-targeted transcription factors (MTFs) involved in early response to JA (PubMed:28733419). With JA2L forms a transcription module that regulates wounding-responsive genes (PubMed:28733419). With ERF.C3 forms a transcription module that regulates pathogen-responsive genes (PubMed:28733419). Plays a critical role in orchestrating JA-mediated defense gene expression during Botrytis cinerea infection (PubMed:28733419). Regulates negatively defense responses to root-knot nematodes, potentially by mediating crosstalk among the hormones strigolactones, abscisic acid (ABA) and jasmonate (JA) (PubMed:30576511). Regulates the termination of JA-mediated defense responses by specifically binding the G-box (5'-CACATG-3') motifs in the promoters of MTB1, MTB2 and MTB3, which are transcription factors that negatively regulates JA signaling (PubMed:30610166). May be involved in JA-induced chilling tolerance, possibly by ameliorating the antioxidant enzyme system of fruit and increasing proline and lycopene levels (PubMed:29528226). {ECO:0000269|PubMed:15231736, ECO:0000269|PubMed:24483714, ECO:0000269|PubMed:28733419, ECO:0000269|PubMed:29528226, ECO:0000269|PubMed:30576511, ECO:0000269|PubMed:30610166}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lj0g3v0343449.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by methyl jasmonate (PubMed:15231736, PubMed:28733419). Induced by wounding (PubMed:15231736). Induced by infection with the fungal pathogen Botrytis cinerea (PubMed:28733419). Induced in fruit by storage in cold (PubMed:29528226). Induced by hydrogen peroxide and infection with root-knot nematodes (PubMed:30576511). {ECO:0000269|PubMed:15231736, ECO:0000269|PubMed:28733419, ECO:0000269|PubMed:29528226, ECO:0000269|PubMed:30576511}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004509726.1 | 0.0 | transcription factor MYC2-like | ||||
Swissprot | A0A3Q7HRZ6 | 0.0 | MYC2_SOLLC; Transcription factor MYC2 | ||||
TrEMBL | A0A2Z6BDE7 | 0.0 | A0A2Z6BDE7_GLYUR; BHLH transcription factor 1 | ||||
STRING | XP_004509726.1 | 0.0 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2938 | 33 | 64 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G32640.1 | 3e-84 | bHLH family protein |