PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj0g3v0340729.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family B3
Protein Properties Length: 528aa    MW: 61428.6 Da    PI: 9.9471
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj0g3v0340729.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B332.91.2e-1014109199
                      EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-E....EEEEE-SSSEE CS
               B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDf....vvFkldgrsef 90 
                      ffk+ t+  + + g+l lp+ f+++++g+  +   + l+ +++ sW+++   +k+++ ++l++ W+eFvk   L++g +    v+F+++g s+f
  Lj0g3v0340729.1  14 FFKIITT-TSIEGGNLKLPNAFTRKYNGEMSN--PVFLKPLDNISWKINW--SKQDSDIWLQNVWEEFVKLYSLDQGHMvwhlVLFEFKGPSKF 102
                      7777755.5555566***********888555..5***************..*************************87222268999887888 PP

                      ..EEEEE-S CS
               B3  91 elvvkvfrk 99 
                         v++f+k
  Lj0g3v0340729.1 103 --EVRIFDK 109
                      ..9999987 PP
2B349.67e-161352236100
                      ..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
               B3   6 tpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                      +++  l+ g l+lp+ f+++++g   +   + l+ +++ sWev    +k+++ ++++kGWkeFvk   L+ g  v+F++++ s+f   v++f+k
  Lj0g3v0340729.1 135 ITPPCLEAGELILPNGFMKKYSGGMSN--PVFLKAPDNISWEVHW--SKHDSYFWFQKGWKEFVKYYSLDHGHLVLFEFKDASDF--GVHIFDK 222
                      4677788889***********666445..5***************..*******************************9988999..9999998 PP

                      S CS
               B3 100 s 100
                      s
  Lj0g3v0340729.1 223 S 223
                      5 PP
3B364.71.4e-20324406697
                      ..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
               B3   6 tpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 
                      ++ ++ +++ l++p +fa+++ +kk   ++++le ++gr+W+v +      + + +++GWk+F+++n+Lk+g ++vF+l++r+  +l+v +f
  Lj0g3v0340729.1 324 LQRYSIERHSLSIPSQFARQYLKKK---RDIRLERLDGRTWKVHY------NLFKFSSGWKKFARDNNLKVGNICVFELTKREPLSLKVLIF 406
                      47899999*************5443...47***************......557799***********************99***9999998 PP
4B337.83.4e-124475251897
                      --HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-.SS.SEE..EEEEE CS
               B3  18 lpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld.gr.sefelvvkvf 97 
                      +p +f++e+ ++k++  t+ l+  + + W v++iy    g+  l+kGW +F+++ +L  gD++vF+l+ ++ ++ el v+++
  Lj0g3v0340729.1 447 VPVSFIREYLNEKKQ--TINLR-IEENLWPVEFIYYPEYGSGKLSKGWIQFARESKLVGGDVCVFELInKEeENPELEVHIL 525
                      799******655545..56654.46699*******88888888***********************9944445555666665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.103.1E-149110IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.73E-1410110IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086311.1113110IPR003340B3 DNA binding domain
CDDcd100172.60E-813108No hitNo description
PfamPF023621.2E-814109IPR003340B3 DNA binding domain
SMARTSM010193.6E-614110IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.107.3E-20125223IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019367.85E-21126223IPR015300DNA-binding pseudobarrel domain
CDDcd100173.92E-14130221No hitNo description
PROSITE profilePS5086312.393130223IPR003340B3 DNA binding domain
SMARTSM010192.6E-14131223IPR003340B3 DNA binding domain
PfamPF023629.7E-14135222IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.2E-19315406IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.73E-18316406IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086313.831319409IPR003340B3 DNA binding domain
SMARTSM010198.6E-16320409IPR003340B3 DNA binding domain
CDDcd100172.28E-18320407No hitNo description
PfamPF023621.1E-18322407IPR003340B3 DNA binding domain
SuperFamilySSF1019365.69E-17424526IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.104.1E-18424526IPR015300DNA-binding pseudobarrel domain
CDDcd100173.58E-13429526No hitNo description
PROSITE profilePS5086311.053430528IPR003340B3 DNA binding domain
SMARTSM010192.5E-9431528IPR003340B3 DNA binding domain
PfamPF023621.1E-10447525IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 528 aa     Download sequence    Send to blast
MASNKQDKNS PIRFFKIITT TSIEGGNLKL PNAFTRKYNG EMSNPVFLKP LDNISWKINW  60
SKQDSDIWLQ NVWEEFVKLY SLDQGHMVWH LVLFEFKGPS KFEVRIFDKN TLEIKYHPLS  120
NKQIPNSATH FFRIITPPCL EAGELILPNG FMKKYSGGMS NPVFLKAPDN ISWEVHWSKH  180
DSYFWFQKGW KEFVKYYSLD HGHLVLFEFK DASDFGVHIF DKSTLEIEYP SNENQGEEHN  240
PDQIGDEILP PKKTKPKPPM SLSQPRQKLR TGKSKGVGKS PELRKCKKVQ VEGRSTECLE  300
GEQLTSTIND ALNKSKGATF MVKLQRYSIE RHSLSIPSQF ARQYLKKKRD IRLERLDGRT  360
WKVHYNLFKF SSGWKKFARD NNLKVGNICV FELTKREPLS LKVLIFPVAQ GGEPSTAQRE  420
AWKYTPKNPS FTVSLKPVIK LGYRPPVPVS FIREYLNEKK QTINLRIEEN LWPVEFIYYP  480
EYGSGKLSKG WIQFARESKL VGGDVCVFEL INKEEENPEL EVHILKRH
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj0g3v0340729.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0048960.0AP004896.1 Lotus japonicus genomic DNA, chromosome 5, clone: LjT16I07, TM0040, complete sequence.
GenBankAP0103090.0AP010309.1 Lotus japonicus genomic DNA, chromosome 5, clone: LjB01H03, BM1799, complete sequence.
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF9834369
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.14e-24B3 family protein