PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj0g3v0335699.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family Dof
Protein Properties Length: 285aa    MW: 31891.4 Da    PI: 5.8569
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj0g3v0335699.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof110.48.9e-3546104261
           zf-Dof   2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 
                      +++alkcprCdstntkfCyynny+ sqPr++C+aC+r+WtkGG+lrnvPvGg  rknkk 
  Lj0g3v0335699.1  46 QSEALKCPRCDSTNTKFCYYNNYNKSQPRHYCRACKRHWTKGGTLRNVPVGGV-RKNKKI 104
                      67899*********************************************975.566554 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF027013.3E-3148103IPR003851Zinc finger, Dof-type
ProDomPD0074784.0E-214897IPR003851Zinc finger, Dof-type
PROSITE profilePS5088426.75750104IPR003851Zinc finger, Dof-type
PROSITE patternPS0136105288IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 285 aa     Download sequence    Send to blast
MGLSSKQVSN RGLDWNQTLL QDQDLELPNP LPMRKQQPKQ QQQSQQSEAL KCPRCDSTNT  60
KFCYYNNYNK SQPRHYCRAC KRHWTKGGTL RNVPVGGVRK NKKIKKSTTS PSSGTTTTSI  120
STTTTSNGKN DVDFNAPLAV TDQKSIPSSL YQPLMQQDLM STRVDSECED LGIGNGMFLS  180
SNGPFPQNQS FLFPFSTSCS FDTNPCAAVS TPMRSSNVYN YGEEFKLMEE PTINTGDNNT  240
QAWEIPAATS TTNMEMPNYW SWEDIDSLVS TDLNVPWDDS DVVKP
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Lja.71200.0pod| root
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj0g3v0335699.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003545886.11e-125dof zinc finger protein DOF3.4
RefseqXP_028202756.11e-125dof zinc finger protein DOF3.4-like
TrEMBLA0A445GQB21e-123A0A445GQB2_GLYSO; Dof zinc finger protein DOF5.3
TrEMBLI1MEF11e-123I1MEF1_SOYBN; Uncharacterized protein
STRINGGLYMA15G07730.11e-124(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF51073356
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G51700.19e-27DOF zinc finger protein 1