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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lj0g3v0334259.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
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Family | Whirly | ||||||||
Protein Properties | Length: 260aa MW: 28804 Da PI: 9.628 | ||||||||
Description | Whirly family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Whirly | 207 | 2.1e-64 | 84 | 222 | 1 | 139 |
Whirly 1 svyktkaalkvkavrptfealdsgnlklkraGglllelanataerkydWekkqsfalsatevaelvdlaskesceffhdpaakgsneGkvrkal 94 s+yk+kaal+v ++ p+f ldsg++k++r+G +ll++a+a+a r+ydW++kq+f+ls+ e++++++l+++esceffhdp +++s+eGkvrk+l Lj0g3v0334259.1 84 SIYKGKAALTVTPRPPEFAPLDSGAFKISREGYVLLQFAPAIASRQYDWNRKQVFSLSVVEMGSVISLGTRESCEFFHDPLKGKSDEGKVRKVL 177 7********************************************************************************************* PP Whirly 95 kvePlpdGsGlfvnlsvtnslvkgnesfsvPvskaefavlrsllv 139 k+ePlpdGsG+f+nlsv+n++v+ +e++++Pv+kae avl s+++ Lj0g3v0334259.1 178 KLEPLPDGSGHFFNLSVQNKIVNIDENIYIPVTKAELAVLSSIFN 222 ******************************************996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.30.31.10 | 3.7E-76 | 73 | 243 | IPR009044 | ssDNA-binding transcriptional regulator |
SuperFamily | SSF54447 | 2.2E-74 | 77 | 260 | IPR009044 | ssDNA-binding transcriptional regulator |
Pfam | PF08536 | 1.9E-61 | 85 | 219 | IPR013742 | Plant transcription factor |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006281 | Biological Process | DNA repair | ||||
GO:0032211 | Biological Process | negative regulation of telomere maintenance via telomerase | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0045910 | Biological Process | negative regulation of DNA recombination | ||||
GO:0009508 | Cellular Component | plastid chromosome | ||||
GO:0009570 | Cellular Component | chloroplast stroma | ||||
GO:0003697 | Molecular Function | single-stranded DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0003723 | Molecular Function | RNA binding | ||||
GO:0042162 | Molecular Function | telomeric DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 260 aa Download sequence Send to blast |
MLHLQLQLHS PPPLLLSSSS SLKLPPNPHS LSLKRFPSKP LTLIRCRHSD LFDQKTFSSS 60 TPQPANPAAV SVGALPPRVY VGHSIYKGKA ALTVTPRPPE FAPLDSGAFK ISREGYVLLQ 120 FAPAIASRQY DWNRKQVFSL SVVEMGSVIS LGTRESCEFF HDPLKGKSDE GKVRKVLKLE 180 PLPDGSGHFF NLSVQNKIVN IDENIYIPVT KAELAVLSSI FNFIMPYLLG WHTFANSVNP 240 EYSSGVNNAN PRYGGDYEWN |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1l3a_A | 1e-108 | 73 | 260 | 32 | 219 | p24: plant transcriptional regulator PBF-2 |
1l3a_B | 1e-108 | 73 | 260 | 32 | 219 | p24: plant transcriptional regulator PBF-2 |
1l3a_C | 1e-108 | 73 | 260 | 32 | 219 | p24: plant transcriptional regulator PBF-2 |
1l3a_D | 1e-108 | 73 | 260 | 32 | 219 | p24: plant transcriptional regulator PBF-2 |
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Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Lja.212 | 0.0 | cell culture| root |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Single-stranded DNA-binding protein that functions in both chloroplasts and nucleus. In chloroplasts, maintains plastid genome stability by preventing break-induced and short homology-dependent illegitimate recombinations. In nucleus, modulates telomere length homeostasis by inhibiting the action of the telomerase at the extreme termini of chromosomes. Is recruited to a distal element upstream of the kinesin KP1 to mediate the transcriptional repression of KP1. Is required for full salicylic acid-dependent plant disease resistance responses. Can bind double-stranded DNA in vivo. {ECO:0000269|PubMed:14960277, ECO:0000269|PubMed:17217467, ECO:0000269|PubMed:19666500, ECO:0000269|PubMed:19669906, ECO:0000269|PubMed:20551348, ECO:0000269|PubMed:21911368}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lj0g3v0334259.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By salicylic acid (SA) and infection by H.parasitica. {ECO:0000269|PubMed:14960277, ECO:0000269|PubMed:19669906}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT142858 | 0.0 | BT142858.1 Lotus japonicus clone JCVI-FLLj-11M4 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_014507438.1 | 1e-141 | single-stranded DNA-binding protein WHY1, chloroplastic | ||||
Swissprot | Q9M9S3 | 1e-114 | WHY1_ARATH; Single-stranded DNA-binding protein WHY1, chloroplastic | ||||
TrEMBL | I3SQW0 | 0.0 | I3SQW0_LOTJA; Uncharacterized protein | ||||
STRING | XP_007153835.1 | 1e-137 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF6416 | 32 | 51 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G14410.1 | 1e-116 | ssDNA-binding transcriptional regulator |