PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj0g3v0329879.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family MYB_related
Protein Properties Length: 358aa    MW: 39811.4 Da    PI: 10.1468
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj0g3v0329879.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding24.56.4e-08262311147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 
                      r +++  E e lv+av++lG+g+W+ +  +     k+Rt  ++k++w ++
  Lj0g3v0329879.1 262 RRPFSVAEVEALVQAVEKLGTGRWRDVKLCAFddaKHRTYVDLKDKWKTL 311
                      678999**********************9999***************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF542365.78E-963151IPR029071Ubiquitin-related domain
Gene3DG3DSA:3.10.20.908.0E-467139No hitNo description
PROSITE profilePS5129413.378257316IPR017930Myb domain
SMARTSM007172.6E-7261314IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.9E-10262312IPR009057Homeodomain-like
SuperFamilySSF466899.79E-16263344IPR009057Homeodomain-like
CDDcd116607.07E-18263313No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 358 aa     Download sequence    Send to blast
MNIPFKKRKL FNCSSGSNSN GFIRSGRTYK SPENDMNQGV SYSSSGISKD PGMETHKHSA  60
LQSRNPHVKL RIKSFRVPEL FIEIPETATI GSLKRAVMEA VTAALGGGLR VGMIFHGKKV  120
RDDSKTLIQT GISHDNQLDT LGFTLEPNSS KNIPLTCAAD SLHVLGGDMP QSLIGHRSSP  180
AVTHERIKGF SNMLPEHQVA SLGNFVESDH DSAPSPINTS VEKNLKDSKE LVTVPEMSKD  240
ALAVLPVHQK SKRTENVQRR IRRPFSVAEV EALVQAVEKL GTGRWRDVKL CAFDDAKHRT  300
YVDLKDKWKT LVHTARISPQ QRRGEPVPQE LLDRVLTAHA YWSQQQSKQQ PETCLLLQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2juh_A3e-592463571112Telomere binding protein TBP1
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed ubiquitously. {ECO:0000269|PubMed:15364931}.
UniprotTISSUE SPECIFICITY: Expressed ubiquitously. Highest expression in flowers and roots. {ECO:0000269|PubMed:15364931, ECO:0000269|PubMed:15688221}.
Functional Description ? help Back to Top
Source Description
UniProtBinds specifically to the plant telomeric double-stranded DNA sequences. At least 2 repeats of telomeric sequences are required for binding. Induces DNA bending. {ECO:0000269|PubMed:15688221}.
UniProtBinds specifically to the plant telomeric double-stranded DNA sequences. At least 6 repeats of telomeric sequences are required for binding.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj0g3v0329879.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027342541.10.0telomere repeat-binding protein 2-like
SwissprotQ6R0E31e-109TRP5_ARATH; Telomere repeat-binding protein 5
SwissprotQ9C7B11e-109TRP3_ARATH; Telomere repeat-binding protein 3
TrEMBLA0A151SUT50.0A0A151SUT5_CAJCA; Telomere-binding protein 1
STRINGGLYMA13G41210.20.0(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07540.11e-100TRF-like 2
Publications ? help Back to Top
  1. Hwang MG,Cho MH
    Arabidopsis thaliana telomeric DNA-binding protein 1 is required for telomere length homeostasis and its Myb-extension domain stabilizes plant telomeric DNA binding.
    Nucleic Acids Res., 2007. 35(4): p. 1333-42
    [PMID:17272298]
  2. Fulcher N,Riha K
    Using Centromere Mediated Genome Elimination to Elucidate the Functional Redundancy of Candidate Telomere Binding Proteins in Arabidopsis thaliana.
    Front Genet, 2015. 6: p. 349
    [PMID:26779251]