PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj0g3v0324039.2
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family MYB_related
Protein Properties Length: 658aa    MW: 73817.5 Da    PI: 7.4672
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj0g3v0324039.2genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding22.82.1e-07595649346
                      SS-HHHHHHHHHHHHHTTTT....-HHHHHHHHT.......TTS-HHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGgg....tWktIartmg.......kgRtlkqcksrwqk 46 
                      +WT+eE+el+ ++v+++G +     Wk+I +          k+R + ++k++w +
  Lj0g3v0324039.2 595 PWTAEEEELIQEGVQKFGCNdqniPWKKIWAFGShvfeqdgKRRMPQDLKDKWKN 649
                      8***********************99999776667778***************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF579031.54E-6300354IPR011011Zinc finger, FYVE/PHD-type
Gene3DG3DSA:3.30.40.101.1E-6301354IPR013083Zinc finger, RING/FYVE/PHD-type
PROSITE profilePS500907.526588651IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.601.7E-9588657IPR009057Homeodomain-like
SuperFamilySSF466894.31E-9590652IPR009057Homeodomain-like
SMARTSM007170.0012592653IPR001005SANT/Myb domain
CDDcd116605.83E-12594652No hitNo description
PfamPF139217.8E-6596654No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 658 aa     Download sequence    Send to blast
MKEKLVSQLG KEVSKNSTEK RSHQTEKNNR ETLCNRSLED NHNRYTASNL CTVNCHNEVF  60
HDESNIPCNA TVIPLHESGG KNSPQQPVEA IPKNFVFPDG MMYHKISECQ TWSKHDTDSN  120
DSQQTVASDK FQDDISNGCG IEISSDRFVS EGDKNNLMKK KHEENFSDMK RKKGSQLLVC  180
EATTVPSVAP QSCLDSTLNV CPQHVSRVES CQTTSMDEID DTVPVEPIPT IDNNANNIQL  240
MIDESQPEQK EPSVKSLHTS QQPVASNKTV IGTVNGCAAK KYEYLCSRYT LGRDLPAMTE  300
STEQNLCMKC NEGGKLMVCK TTTCQLMMHK NCLGASCQLD ANGNVFCPFC AYSHTISEYL  360
EAKKKASLAR KELAFFISRG ISNQPAERVH EFSRHERSLS RKSRKCEHIH IKNNGSDPLT  420
RSCENRGYHV GERTNEVNNL HFERSQQQAS KSRVHSSCRV KENVNNGLAD DVTREEDGGK  480
MPNAKSLTGG KVEGKEGPSD HIDKHEGGCF SCKRPNIVPG NQSCAGEQVP KNMTKQHNMG  540
AMVEPDCAHD TGKAEISEGE CEKHSISRDS TSFHKQEVQF SKSQATPQSR RKKIPWTAEE  600
EELIQEGVQK FGCNDQNIPW KKIWAFGSHV FEQDGKRRMP QDLKDKWKNM CKAHSKQK
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1158172KKKHEENFSDMKRKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj0g3v0324039.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004516067.10.0uncharacterized protein LOC101508857
RefseqXP_012567479.10.0uncharacterized protein LOC101508857
TrEMBLA0A1S3DWD40.0A0A1S3DWD4_CICAR; uncharacterized protein LOC101508857
STRINGXP_004516066.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF38722224