PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lj0g3v0324039.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
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Family | MYB_related | ||||||||
Protein Properties | Length: 658aa MW: 73817.5 Da PI: 7.4672 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 22.8 | 2.1e-07 | 595 | 649 | 3 | 46 |
SS-HHHHHHHHHHHHHTTTT....-HHHHHHHHT.......TTS-HHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGgg....tWktIartmg.......kgRtlkqcksrwqk 46 +WT+eE+el+ ++v+++G + Wk+I + k+R + ++k++w + Lj0g3v0324039.2 595 PWTAEEEELIQEGVQKFGCNdqniPWKKIWAFGShvfeqdgKRRMPQDLKDKWKN 649 8***********************99999776667778***************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57903 | 1.54E-6 | 300 | 354 | IPR011011 | Zinc finger, FYVE/PHD-type |
Gene3D | G3DSA:3.30.40.10 | 1.1E-6 | 301 | 354 | IPR013083 | Zinc finger, RING/FYVE/PHD-type |
PROSITE profile | PS50090 | 7.526 | 588 | 651 | IPR017877 | Myb-like domain |
Gene3D | G3DSA:1.10.10.60 | 1.7E-9 | 588 | 657 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 4.31E-9 | 590 | 652 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 0.0012 | 592 | 653 | IPR001005 | SANT/Myb domain |
CDD | cd11660 | 5.83E-12 | 594 | 652 | No hit | No description |
Pfam | PF13921 | 7.8E-6 | 596 | 654 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 658 aa Download sequence Send to blast |
MKEKLVSQLG KEVSKNSTEK RSHQTEKNNR ETLCNRSLED NHNRYTASNL CTVNCHNEVF 60 HDESNIPCNA TVIPLHESGG KNSPQQPVEA IPKNFVFPDG MMYHKISECQ TWSKHDTDSN 120 DSQQTVASDK FQDDISNGCG IEISSDRFVS EGDKNNLMKK KHEENFSDMK RKKGSQLLVC 180 EATTVPSVAP QSCLDSTLNV CPQHVSRVES CQTTSMDEID DTVPVEPIPT IDNNANNIQL 240 MIDESQPEQK EPSVKSLHTS QQPVASNKTV IGTVNGCAAK KYEYLCSRYT LGRDLPAMTE 300 STEQNLCMKC NEGGKLMVCK TTTCQLMMHK NCLGASCQLD ANGNVFCPFC AYSHTISEYL 360 EAKKKASLAR KELAFFISRG ISNQPAERVH EFSRHERSLS RKSRKCEHIH IKNNGSDPLT 420 RSCENRGYHV GERTNEVNNL HFERSQQQAS KSRVHSSCRV KENVNNGLAD DVTREEDGGK 480 MPNAKSLTGG KVEGKEGPSD HIDKHEGGCF SCKRPNIVPG NQSCAGEQVP KNMTKQHNMG 540 AMVEPDCAHD TGKAEISEGE CEKHSISRDS TSFHKQEVQF SKSQATPQSR RKKIPWTAEE 600 EELIQEGVQK FGCNDQNIPW KKIWAFGSHV FEQDGKRRMP QDLKDKWKNM CKAHSKQK |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 158 | 172 | KKKHEENFSDMKRKK |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lj0g3v0324039.2 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004516067.1 | 0.0 | uncharacterized protein LOC101508857 | ||||
Refseq | XP_012567479.1 | 0.0 | uncharacterized protein LOC101508857 | ||||
TrEMBL | A0A1S3DWD4 | 0.0 | A0A1S3DWD4_CICAR; uncharacterized protein LOC101508857 | ||||
STRING | XP_004516066.1 | 0.0 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3872 | 22 | 24 |