PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj0g3v0321259.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family FAR1
Protein Properties Length: 240aa    MW: 27568.1 Da    PI: 8.1363
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj0g3v0321259.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR165.21.7e-2062155190
             FAR1   1 kfYneYAkevGFsvrkskskks.krngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek...dgkwevtkleleHnHela 90 
                      ++Y+e++k++GFs+r+++++ +    +  t+r fvC + g++  ++++++k +r+r+++r+gC+a ++++k++     +w+vt + ++HnHel 
  Lj0g3v0321259.1  62 EYYSEFSKRCGFSIRRHRTEGKdGVGKGLTRRYFVCHRAGNTPVKTSTQSKPQRNRKSSRCGCQAYMRISKTTefgAPEWRVTGFANHHNHELL 155
                      69*************9998877356667999**************99999*********************9988888**************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031014.1E-1762155IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 240 aa     Download sequence    Send to blast
MSEEVGSMLV VYDDPSDQHS LSLGDTSSTE ESPDETRLSL ETANAAIPYI GQRFATHDAA  60
YEYYSEFSKR CGFSIRRHRT EGKDGVGKGL TRRYFVCHRA GNTPVKTSTQ SKPQRNRKSS  120
RCGCQAYMRI SKTTEFGAPE WRVTGFANHH NHELLEPNQV RFLPAYRTIS DTDKNRILMF  180
AKTGISVHQM MRLMELEKCV EPGFLPFTEK DIRNLLQSFR KLDPEEESLD LLRMCRNIKE
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in hypocotyls, rosette and cauline leaves, inflorescences stems, flowers and siliques. {ECO:0000269|PubMed:15591448}.
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription activator involved in regulating light control of development.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj0g3v0321259.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269|PubMed:15591448}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150380.0AP015038.1 Vigna angularis var. angularis DNA, chromosome 5, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006588528.11e-167protein FAR1-RELATED SEQUENCE 11
RefseqXP_028184456.11e-167protein FAR1-RELATED SEQUENCE 11
SwissprotQ9SY661e-146FRS11_ARATH; Protein FAR1-RELATED SEQUENCE 11
TrEMBLA0A0B2PLU41e-166A0A0B2PLU4_GLYSO; Protein FAR1-RELATED SEQUENCE 11
TrEMBLA0A151T8411e-167A0A151T841_CAJCA; Protein FAR1-RELATED SEQUENCE 11
TrEMBLI1L7C41e-166I1L7C4_SOYBN; Uncharacterized protein
STRINGGLYMA10G00380.11e-166(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF59430113
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10240.11e-148FAR1-related sequence 11
Publications ? help Back to Top
  1. Joly-Lopez Z, et al.
    Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements.
    Front Plant Sci, 2017. 8: p. 2027
    [PMID:29250089]