PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj0g3v0318189.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family bHLH
Protein Properties Length: 326aa    MW: 35776.9 Da    PI: 6.5236
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj0g3v0318189.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH48.12e-1580125555
                      HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      hn  Er+RRdriN+++  L+el+P +      K +Ka++L +A+eY+ksLq
  Lj0g3v0318189.1  80 HNLSERKRRDRINEKMRALQELIPRC-----NKSDKASMLDEAIEYLKSLQ 125
                      9************************8.....6******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088817.85475124IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474599.55E-2178153IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.9E-2079133IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000107.5E-1380125IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.17E-1680129No hitNo description
SMARTSM003532.9E-1781130IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006783Biological Processheme biosynthetic process
GO:0009740Biological Processgibberellic acid mediated signaling pathway
GO:0009959Biological Processnegative gravitropism
GO:0010100Biological Processnegative regulation of photomorphogenesis
GO:0010161Biological Processred light signaling pathway
GO:0010187Biological Processnegative regulation of seed germination
GO:0015995Biological Processchlorophyll biosynthetic process
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0010313Molecular Functionphytochrome binding
GO:0042802Molecular Functionidentical protein binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 326 aa     Download sequence    Send to blast
MSAAGIAGPS TATFDMTVTS SPGGSSGSAE PDQKEPVVDR KRKSRELEES EFQSEDVDFE  60
SLEAKKQGRG AKKSRAAEIH NLSERKRRDR INEKMRALQE LIPRCNKSDK ASMLDEAIEY  120
LKSLQLQVQM MSMGCGMVPM MFPGVQQYMP PMGMGMGMGM GMGMEMGMGM NRPIMPFPNM  180
LTANSAMPAT GWVVVLELRT EKNSQIIPLQ NILPANSAMP ATAAAAAHLG PRFPVPPFQN  240
IPHVPAAPDS SGMQQPPNQS DHVLNSFATL PPDQSRFPNF TDPFQQYLGS HQVQIQLMQA  300
MNQLNVNKPS TSRGQENPEK HQSEET
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18388ERKRRD
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00074ChIP-chipTransfer from AT2G20180Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj0g3v0318189.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKT0311141e-144KT031114.1 Glycine max clone HN_CCL_148 bHLH transcription factor (Glyma10g04890.2) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013468377.11e-122transcription factor PIF1
TrEMBLA0A072VK931e-120A0A072VK93_MEDTR; Putative transcription factor bHLH family
STRINGGLYMA13G19250.41e-114(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF46073351
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G20180.12e-33phytochrome interacting factor 3-like 5