PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj0g3v0315789.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family C2H2
Protein Properties Length: 574aa    MW: 62923.6 Da    PI: 9.1575
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj0g3v0315789.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.22.9e-056890123
                     EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                     + C+ C+k F r  nL+ H r H
  Lj0g3v0315789.1 68 FICEVCNKGFQREQNLQLHRRGH 90
                     89*******************88 PP
2zf-C2H212.50.00044145167123
                      EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                      +kC++C+k +  +s+ k H +t+
  Lj0g3v0315789.1 145 WKCEKCSKKYAVQSDWKAHSKTC 167
                      58*****************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.606.4E-66790IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.96E-76790No hitNo description
SMARTSM003550.00526890IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.996890IPR007087Zinc finger, C2H2
PfamPF121712.8E-56890IPR022755Zinc finger, double-stranded RNA binding
PROSITE patternPS0002807090IPR007087Zinc finger, C2H2
SMARTSM00355160110140IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.601.5E-4133166IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.96E-7140165No hitNo description
SMARTSM00355140145165IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 574 aa     Download sequence    Send to blast
MAASSSPFLE IRQENQSQNT QQHQSSSSTA APPVVPQKKR RNHQPGTPYP DSEVIALSPK  60
TLMATNRFIC EVCNKGFQRE QNLQLHRRGH NLPWKLKQKN TKEQAKRKVY LCPEPTCVHH  120
DPSRALGDLT GIKKHFSRKH GEKKWKCEKC SKKYAVQSDW KAHSKTCGTR EYRCDCGTLF  180
SRRDSFITHR AFCDALAHES ARHPSNLNPL GTHLYGTNHM SLGLSHVGTQ LQNQNSILTL  240
GNAAAGAPKF EHLISPFQQS SFAHSSSPQS LSSSSPFFTA DPNQGIQDLQ SHHHQGQFSN  300
KQLHGLMQLP DFQGPTTNNT STSAPSSVSA NSAANFFNLS FFPNSNSNDS TIPDQFNSIT  360
AGTTLYTNSP GSSNHHQVGS ALSSIFGNSS LQQENNMPPH MSATALLQKA SQMGLSTTTI  420
NNGSSLLRRM ESSSTNGSES ELNNFAATFG SDHSKGEGIR SSMENDHQHH LHGIMNSLAN  480
RNNNSMFGHV KGNENNNVSH FHIMEEAKRL SSQNLGGVCF GGSDKLTLDF LGVNGGIVRN  540
MSGGFSQREQ LDSILDPKLE STQANQQFGS SSLQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C2e-34141205367Zinc finger protein JACKDAW
5b3h_F2e-34141205367Zinc finger protein JACKDAW
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Lja.13191e-152flower| pod| root
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj0g3v0315789.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0097921e-132AP009792.1 Lotus japonicus genomic DNA, clone: LjT42M11, TM2098, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019462011.10.0PREDICTED: protein indeterminate-domain 5, chloroplastic-like isoform X1
RefseqXP_020240064.10.0protein indeterminate-domain 5, chloroplastic
RefseqXP_020240065.10.0protein indeterminate-domain 5, chloroplastic
TrEMBLA0A1J7HHK30.0A0A1J7HHK3_LUPAN; Uncharacterized protein
STRINGGLYMA07G19470.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15363397
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G02070.11e-102indeterminate(ID)-domain 5