PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj0g3v0314829.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family GRAS
Protein Properties Length: 583aa    MW: 64842.1 Da    PI: 6.4201
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj0g3v0314829.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS4271.5e-1302135821373
             GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfs 94 
                      l++lL++cA+a+s+++++  ++l+++ +  +s +g+p+qRl ay++e+L ar   s++++y+al+++e +    +e l++++l++e++P+lkf+
  Lj0g3v0314829.1 213 LKQLLIACARAMSENNMRDFDQLIEKARSAVSINGEPIQRLGAYMVEGLVARKEASGNSIYHALNCREPE---GEELLSYMQLLFEICPYLKFG 303
                      689******************************************************************9...9******************** PP

             GRAS  95 hltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrl 186
                      +++aN aI ea  +e+r+HiiDf+i qG QW++LlqaLa+Rp+g+p++RiTg+++p s+  + + l  +g+rLa + e++g+p+ef+  v    
  Lj0g3v0314829.1 304 YMAANGAIAEACRNEDRIHIIDFQIAQGSQWMTLLQALAARPGGAPHVRITGIDDPVSKyaRGDGLDIVGKRLALMSEKFGIPVEFHG-VPVFG 396
                      ********************************************************999999**************************.68889 PP

             GRAS 187 edleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklprese 280
                       d++ ++L+++pgEalaVn+ lqlh++ desv+++++rd +L+lvkslsPkvv++veqe+++n+++F++rf+e+l+yy a+f+s++++l+r+s+
  Lj0g3v0314829.1 397 PDVTRDMLDIRPGEALAVNFPLQLHHTADESVDVSNPRDGLLRLVKSLSPKVVTLVEQESNTNTSPFFNRFMETLDYYLAIFESIDVTLARNSK 490
                      9********************************************************************************************* PP

             GRAS 281 erikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373
                      eri+vE+++l+r++vnv+aceg+er+erhe ++kW++rl++aGF++ pls+++++ +k llr ++ + y++ e++g+++lgWk+r+L+s+SaW
  Lj0g3v0314829.1 491 ERINVEQHCLARDVVNVIACEGKERVERHELFGKWKSRLTMAGFRQSPLSSYVNSVIKNLLRCYS-EHYTLIEKDGAMLLGWKNRSLISASAW 582
                      *************************************************************9999.66************************* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098566.013187564IPR005202Transcription factor GRAS
PfamPF035145.1E-128213582IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 583 aa     Download sequence    Send to blast
MDSQQLFSFN ATSAGLPYMP SFPTIPSLPN LLGSFKADRG NSPNSPFSTH FDSDALSALS  60
DTQDPPCSGE FFSGLSSSCN SSPETNHYMH RSISSVVNSL QLYSARNTSS LLQNTSCNQK  120
IRHALLELET ALMAPDDNEV TTSNTSFAES TRPMRSMSWS HEHQGSQSQY IQRQVSHVSS  180
STQSREGVHV EKRQKLMEEA KASPQGFPSS NDLKQLLIAC ARAMSENNMR DFDQLIEKAR  240
SAVSINGEPI QRLGAYMVEG LVARKEASGN SIYHALNCRE PEGEELLSYM QLLFEICPYL  300
KFGYMAANGA IAEACRNEDR IHIIDFQIAQ GSQWMTLLQA LAARPGGAPH VRITGIDDPV  360
SKYARGDGLD IVGKRLALMS EKFGIPVEFH GVPVFGPDVT RDMLDIRPGE ALAVNFPLQL  420
HHTADESVDV SNPRDGLLRL VKSLSPKVVT LVEQESNTNT SPFFNRFMET LDYYLAIFES  480
IDVTLARNSK ERINVEQHCL ARDVVNVIAC EGKERVERHE LFGKWKSRLT MAGFRQSPLS  540
SYVNSVIKNL LRCYSEHYTL IEKDGAMLLG WKNRSLISAS AWH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A8e-6322058226378Protein SCARECROW
5b3h_A7e-6322058225377Protein SCARECROW
5b3h_D7e-6322058225377Protein SCARECROW
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Lja.6770.0cell culture| flower| root
Functional Description ? help Back to Top
Source Description
UniProtMay play a regulatory role in the early step of oligosaccharide elicitor response, downstream of the membrane-associated high-affinity chitin-binding protein. {ECO:0000269|PubMed:12591613}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj0g3v0314829.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By oligosaccharide elicitor (N-Acetylchitooligosaccharide) extracted from the rice blast fungus (M.grisea) cell wall. Strongest induction by chitin oligomer with greater degree of polymerization (heptamer). By inoculation of M.grisea in rice cell suspension culture. {ECO:0000269|PubMed:12591613}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027341078.10.0scarecrow-like protein 21 isoform X1
RefseqXP_027341079.10.0scarecrow-like protein 21 isoform X1
RefseqXP_027341080.10.0scarecrow-like protein 21 isoform X1
SwissprotQ69VG10.0CIGR1_ORYSJ; Chitin-inducible gibberellin-responsive protein 1
TrEMBLA0A1S2XDG90.0A0A1S2XDG9_CICAR; scarecrow-like protein 21
STRINGXP_004487630.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF42993360
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48150.21e-176GRAS family protein
Publications ? help Back to Top
  1. Day RB, et al.
    Two rice GRAS family genes responsive to N -acetylchitooligosaccharide elicitor are induced by phytoactive gibberellins: evidence for cross-talk between elicitor and gibberellin signaling in rice cells.
    Plant Mol. Biol., 2004. 54(2): p. 261-72
    [PMID:15159627]