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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| TF ID | Lj0g3v0313589.1 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
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| Family | NF-YB | ||||||||
| Protein Properties | Length: 89aa MW: 10180 Da PI: 9.1544 | ||||||||
| Description | NF-YB family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | NF-YB | 62.8 | 7.5e-20 | 7 | 89 | 5 | 92 |
NF-YB 5 drflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyre 92
+ +lP v++im++vlP +akis++aket+ +cvs+fi+ + s+k ++k ++ +dll a+ ++ +++yv++l + +++e
Lj0g3v0313589.1 7 NLHLPKEAVVKIMRRVLPLHAKISDEAKETMVKCVSKFITTIL---SQKG--AQQKVVSVEDLLLAMEKINLNEYVQSLLNFYDRFQE 89
6689999*****************************9987776...4554..46799**********************999999875 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| Gene3D | G3DSA:1.10.20.10 | 2.6E-20 | 5 | 89 | IPR009072 | Histone-fold |
| SuperFamily | SSF47113 | 4.95E-18 | 7 | 89 | IPR009072 | Histone-fold |
| Pfam | PF00808 | 3.1E-11 | 9 | 68 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
| Gene Ontology ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| GO Term | GO Category | GO Description | ||||
| GO:0046982 | Molecular Function | protein heterodimerization activity | ||||
| Sequence ? help Back to Top |
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| Protein Sequence Length: 89 aa Download sequence Send to blast |
MLMGSSNLHL PKEAVVKIMR RVLPLHAKIS DEAKETMVKC VSKFITTILS QKGAQQKVVS 60 VEDLLLAMEK INLNEYVQSL LNFYDRFQE |
| 3D Structure ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
| 5g49_A | 2e-19 | 1 | 89 | 4 | 97 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-6 |
| Cis-element ? help Back to Top | |
|---|---|
| Source | Link |
| PlantRegMap | Lj0g3v0313589.1 |
| Regulation -- PlantRegMap ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Upstream Regulator | Target Gene | ||||
| PlantRegMap | Retrieve | - | ||||
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT1G21970.1 | 2e-20 | NF-YB family protein | ||||
| ©2010-2022, Center
for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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