PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lj0g3v0312929.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
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Family | bHLH | ||||||||
Protein Properties | Length: 358aa MW: 39503.1 Da PI: 5.4804 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 35 | 2.6e-11 | 170 | 215 | 5 | 55 |
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 h +Er+RR+++ ++f L +P + K +Ka++L+ A++Y+k+L+ Lj0g3v0312929.1 170 HILAERKRRQELTERFIALSATIPGL-----SKTDKASVLRAAIDYVKQLK 215 8899*********************8.....7*****************95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 15.51 | 165 | 214 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 4.32E-16 | 166 | 226 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 4.9E-16 | 170 | 226 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 5.4E-9 | 170 | 214 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 2.56E-11 | 170 | 219 | No hit | No description |
SMART | SM00353 | 2.9E-14 | 171 | 220 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 358 aa Download sequence Send to blast |
MEESWENWHL HPEMDCDDDY FANKSNMEED EEFLRQILLQ APAFSSESES NNSLHASSTV 60 ASEEIIGNMV KSHSSNSIVS SQQGPKKPRG SSSPKAYILS FDNSTIIPAN PEGKLLGSNK 120 GSTRGTKRCS DSSSALPNKL QQVQNTESEK TRANNQGTKR ARTTSQTIDH ILAERKRRQE 180 LTERFIALSA TIPGLSKTDK ASVLRAAIDY VKQLKERVQE LEKQEKKNGV EKVIVIKKPD 240 LRGNEDTTNS GDIITTSSDH DDCSTILPEI AARALGKEVL IEIHCEKENG TELKILDHLE 300 NLHLSVNGSS VLPFGNSALS VTVIAQMGDA YGMTMNDLVN SLRQLLLKSQ MSSDSDPY |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 173 | 178 | ERKRRQ |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Lja.4557 | 0.0 | floral bud| pod| root |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lj0g3v0312929.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_028239034.1 | 1e-135 | transcription factor bHLH18-like | ||||
TrEMBL | A0A445JRA5 | 1e-134 | A0A445JRA5_GLYSO; Transcription factor bHLH25 isoform A | ||||
STRING | GLYMA08G23050.2 | 1e-134 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF13110 | 12 | 30 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G37850.1 | 9e-45 | bHLH family protein |