PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj0g3v0312929.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family bHLH
Protein Properties Length: 358aa    MW: 39503.1 Da    PI: 5.4804
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj0g3v0312929.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH352.6e-11170215555
                      HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      h  +Er+RR+++ ++f  L   +P +      K +Ka++L+ A++Y+k+L+
  Lj0g3v0312929.1 170 HILAERKRRQELTERFIALSATIPGL-----SKTDKASVLRAAIDYVKQLK 215
                      8899*********************8.....7*****************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.51165214IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.32E-16166226IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.9E-16170226IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.4E-9170214IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.56E-11170219No hitNo description
SMARTSM003532.9E-14171220IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 358 aa     Download sequence    Send to blast
MEESWENWHL HPEMDCDDDY FANKSNMEED EEFLRQILLQ APAFSSESES NNSLHASSTV  60
ASEEIIGNMV KSHSSNSIVS SQQGPKKPRG SSSPKAYILS FDNSTIIPAN PEGKLLGSNK  120
GSTRGTKRCS DSSSALPNKL QQVQNTESEK TRANNQGTKR ARTTSQTIDH ILAERKRRQE  180
LTERFIALSA TIPGLSKTDK ASVLRAAIDY VKQLKERVQE LEKQEKKNGV EKVIVIKKPD  240
LRGNEDTTNS GDIITTSSDH DDCSTILPEI AARALGKEVL IEIHCEKENG TELKILDHLE  300
NLHLSVNGSS VLPFGNSALS VTVIAQMGDA YGMTMNDLVN SLRQLLLKSQ MSSDSDPY
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1173178ERKRRQ
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Lja.45570.0floral bud| pod| root
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj0g3v0312929.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028239034.11e-135transcription factor bHLH18-like
TrEMBLA0A445JRA51e-134A0A445JRA5_GLYSO; Transcription factor bHLH25 isoform A
STRINGGLYMA08G23050.21e-134(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF131101230
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.19e-45bHLH family protein