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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lj0g3v0311479.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
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Family | DBB | ||||||||
Protein Properties | Length: 241aa MW: 26762.5 Da PI: 4.3723 | ||||||||
Description | DBB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-B_box | 18.8 | 3.3e-06 | 4 | 44 | 5 | 39 |
zf-B_box 5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htv 39 +C+ +++++ +C+++ +lC +C + H+ H++ Lj0g3v0311479.1 4 MCDFCGDQRSMVYCRSDAACLCLSCDRNVHSAnalsrrHSR 44 6*****************************65677777776 PP | |||||||
2 | zf-B_box | 26 | 1.9e-08 | 46 | 89 | 4 | 42 |
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42 C++++++++ C++ ++ lC++C +H g H+++p+ Lj0g3v0311479.1 46 LLCERCNSQPAFVRCTEEKVSLCQNCDWVGH-GastsstHKRQPI 89 57*****************************.6589999999886 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50119 | 9.741 | 1 | 47 | IPR000315 | B-box-type zinc finger |
SMART | SM00336 | 6.1E-9 | 4 | 47 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 1.17E-6 | 4 | 47 | No hit | No description |
PROSITE profile | PS50119 | 9.812 | 43 | 89 | IPR000315 | B-box-type zinc finger |
Pfam | PF00643 | 3.6E-5 | 46 | 89 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 8.05E-6 | 47 | 89 | No hit | No description |
SMART | SM00336 | 0.16 | 48 | 89 | IPR000315 | B-box-type zinc finger |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005622 | Cellular Component | intracellular | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 241 aa Download sequence Send to blast |
MGYMCDFCGD QRSMVYCRSD AACLCLSCDR NVHSANALSR RHSRTLLCER CNSQPAFVRC 60 TEEKVSLCQN CDWVGHGAST SSTHKRQPIN CYSGCPAASE LSSIWSFVDD IPSMSDSTCE 120 QELGLMSINE NRGENGWVPP ENQNVSGSDQ GTDLPGSDKR WIGTSSKPEL SSEPRVQDQP 180 AGPSNEYLPK LYCHATKCAS IREDDDLYGD FNMDEVNLNF ENYEELFGMA LTHSESLFEN 240 G |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lj0g3v0311479.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017406548.1 | 1e-139 | PREDICTED: zinc finger protein CONSTANS-LIKE 9-like | ||||
Refseq | XP_017406549.1 | 1e-139 | PREDICTED: zinc finger protein CONSTANS-LIKE 9-like | ||||
Refseq | XP_017406550.1 | 1e-139 | PREDICTED: zinc finger protein CONSTANS-LIKE 9-like | ||||
Refseq | XP_017406551.1 | 1e-139 | PREDICTED: zinc finger protein CONSTANS-LIKE 9-like | ||||
Refseq | XP_017406553.1 | 1e-139 | PREDICTED: zinc finger protein CONSTANS-LIKE 9-like | ||||
Refseq | XP_017406554.1 | 1e-139 | PREDICTED: zinc finger protein CONSTANS-LIKE 9-like | ||||
Swissprot | Q9LUA9 | 2e-79 | COL10_ARATH; Zinc finger protein CONSTANS-LIKE 10 | ||||
TrEMBL | A0A0L9T8J6 | 1e-138 | A0A0L9T8J6_PHAAN; Uncharacterized protein | ||||
TrEMBL | A0A0S3S847 | 1e-138 | A0A0S3S847_PHAAN; Uncharacterized protein | ||||
STRING | GLYMA20G07051.2 | 1e-135 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4362 | 33 | 53 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G48250.1 | 9e-82 | B-box type zinc finger protein with CCT domain |
Publications ? help Back to Top | |||
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