PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj0g3v0307149.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family bHLH
Protein Properties Length: 282aa    MW: 32647.9 Da    PI: 7.1785
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj0g3v0307149.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH21.63.9e-07135176955
                      HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                       r+RR+++ ++   L++l+P++     kK++  + Le+A +Y+k Lq
  Lj0g3v0307149.1 135 ARQRRQKLSEKTRCLQKLMPWD-----KKMDQGTLLEEAYKYVKFLQ 176
                      59*******************9.....9******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088811.928126175IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.53E-10131189IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.05E-5132178No hitNo description
SMARTSM003534.2E-6132181IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.7E-9134184IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.5E-4135176IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 282 aa     Download sequence    Send to blast
MDPMFSGDSS ALDPMFSGIS LHHLLTLNPS LFPDQQPNLH AADTINLLTP KSEYPNFENH  60
QQQQLFTSSY PDYPPEQPFN IFPHFQPPPP PHFHHLPQLH SPETPYWKRF RHQEIETFSP  120
PPPPAPAVIL QSHLARQRRQ KLSEKTRCLQ KLMPWDKKMD QGTLLEEAYK YVKFLQAQTS  180
VLQSMPTTTR FAAASAGGVF GEMERLNRSQ ALQILVNSPV AQTMLYSKGL CVFSVEQVAL  240
LRKFTERKQH QHQHHHFHQN QIQEQEQEQE MSDHDSSKTF LN
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj0g3v0307149.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027343343.13e-80transcription factor bHLH117
TrEMBLA0A0L9UMQ82e-76A0A0L9UMQ8_PHAAN; Uncharacterized protein
TrEMBLA0A0S3SH922e-76A0A0S3SH92_PHAAN; Uncharacterized protein
STRINGXP_007149941.16e-76(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF134262124
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G22100.13e-27bHLH family protein