PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj0g3v0305759.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family bHLH
Protein Properties Length: 408aa    MW: 45629 Da    PI: 6.0865
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj0g3v0305759.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH36.96.4e-12223264854
                      HHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
              HLH   8 rErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                       Er+RR+++ s+f+ L++l+P++     +K + a+++  A++YI++L
  Lj0g3v0305759.1 223 TERQRREDLSSKFDALKDLIPNP-----TKTDRASVVGDAIDYIREL 264
                      6**********************.....9****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.51E-14214284IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.015215264IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.108.7E-12216281IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.0E-12221270IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.3E-9223264IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.79E-12224269No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009555Biological Processpollen development
GO:0048658Biological Processanther wall tapetum development
GO:0052543Biological Processcallose deposition in cell wall
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 408 aa     Download sequence    Send to blast
MIVHGTQIVS ESDPPIEAVI TGTATRTNHR FAENVGLSVE SLSHPYSSGE DAITVAASVD  60
TTTMEITASH PQQMDFHKEN ENPYNNHSNG FNNGSSHDLS FHQNQHFPYT IPTPDLLNLM  120
PRTQAFPFGN SSVSFENTNL PVFYDPLLHL NLPQAPPPPH GYYNNNNTIP PSRNGSFVFG  180
EEEYGMEQDG RAFGNGVLEF TQDVTCAGKK RGGKRVKQVT VTTERQRRED LSSKFDALKD  240
LIPNPTKTDR ASVVGDAIDY IRELLRTVSE LKLLAEKKRH EKQRIKRQKV EEGDLKMVPI  300
GDSDEHSYNE SLRSSWIQRK SKDTEVEVRI IDDEVTVKLV QRKKINCLWY ASHVLEELKL  360
DLQHVSGGHI GDFCSFLLNS KICEGSSVYA SAIASKLIEV LDTSFSAA
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj0g3v0305759.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020229990.11e-140transcription factor bHLH91
TrEMBLA0A371H8R31e-130A0A371H8R3_MUCPR; Transcription factor bHLH91 (Fragment)
STRINGXP_007156379.11e-121(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF14498811
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G31220.12e-70bHLH family protein