PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Lj0g3v0298849.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
|
||||||||
Family | MYB | ||||||||
Protein Properties | Length: 402aa MW: 43392.6 Da PI: 5.6276 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 57.1 | 4.2e-18 | 60 | 105 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg+W++eEd l ++v+q+G ++W+ Iar ++ gR++k+c++rw + Lj0g3v0298849.1 60 RGPWSPEEDTVLSQLVAQFGARNWSMIARGIP-GRSGKSCRLRWCNQ 105 89******************************.***********985 PP | |||||||
2 | Myb_DNA-binding | 58.9 | 1.1e-18 | 112 | 156 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r+++T+eEd l++ a++ +G++ W++Iar ++ gRt++ +k++w++ Lj0g3v0298849.1 112 RKPFTEEEDRLIISAHAIHGNR-WAAIARLLP-GRTDNAIKNHWNST 156 789*******************.*********.***********986 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 19.571 | 55 | 106 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 2.48E-31 | 57 | 153 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.0E-14 | 59 | 108 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.6E-16 | 60 | 105 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 7.9E-26 | 61 | 113 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 3.99E-14 | 62 | 104 | No hit | No description |
PROSITE profile | PS51294 | 26.661 | 107 | 161 | IPR017930 | Myb domain |
SMART | SM00717 | 1.9E-18 | 111 | 159 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.5E-16 | 112 | 156 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.88E-14 | 114 | 157 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 5.7E-24 | 114 | 160 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0009651 | Biological Process | response to salt stress | ||||
GO:0009723 | Biological Process | response to ethylene | ||||
GO:0009733 | Biological Process | response to auxin | ||||
GO:0009737 | Biological Process | response to abscisic acid | ||||
GO:0009739 | Biological Process | response to gibberellin | ||||
GO:0009751 | Biological Process | response to salicylic acid | ||||
GO:0009753 | Biological Process | response to jasmonic acid | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005737 | Cellular Component | cytoplasm | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 402 aa Download sequence Send to blast |
MTEVDPTAAP TTAANELLAT ADEAKTSAVA GGERGEGSEL GGGEVEASDV GEGSGAGRVR 60 GPWSPEEDTV LSQLVAQFGA RNWSMIARGI PGRSGKSCRL RWCNQLDPCV KRKPFTEEED 120 RLIISAHAIH GNRWAAIARL LPGRTDNAIK NHWNSTLRRR CMGLGIHVSS YADTMGGYSS 180 FEKTKASSEE TMSIGDINSM NPPEVRNVMT NNEIRQYENK HPQKDGAEVE GHPTLYRPKS 240 RLSAFSVYNP LGKPTTESTP KIFPRQGPLF QPLIPDAGTC KLFDGVGCEP MVPSQCGHGC 300 CSSELRGSHA HDSLLGPEFV DYLEPPSFSS DELISITTDL NNMAWIKSGL ENVGAGVTEN 360 TTNLTASNGY MQFENGSGKF LGAMQMQSAT MPQQHFAMPA QV |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 4e-41 | 59 | 160 | 6 | 107 | B-MYB |
Search in ModeBase |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Lj0g3v0298849.1 |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: Slightly induced by salicylic acid. {ECO:0000269|PubMed:16463103}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_020233746.1 | 0.0 | transcription factor MYB1 | ||||
Swissprot | Q42575 | 1e-87 | MYB1_ARATH; Transcription factor MYB1 | ||||
TrEMBL | A0A151S1V5 | 0.0 | A0A151S1V5_CAJCA; Transcription factor MYB44 | ||||
STRING | GLYMA14G06870.2 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3986 | 33 | 62 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G55730.1 | 1e-103 | myb domain protein 109 |
Publications ? help Back to Top | |||
---|---|---|---|
|