PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj0g3v0292969.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family bHLH
Protein Properties Length: 292aa    MW: 33185.5 Da    PI: 7.5869
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj0g3v0292969.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH36.49.1e-12128175355
                      HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      + h ++Er+RR+++ + f  L  l+P +     +K++Ka++L  +++Y+k+Lq
  Lj0g3v0292969.1 128 QDHIIAERKRREKLSQQFIALSALVPGL-----QKMDKASVLGDTIKYLKQLQ 175
                      5799***********************9.....8******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.688125174IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.6E-17129194IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.0E-9129175IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.44E-16129193IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.83E-11130179No hitNo description
SMARTSM003534.0E-14131180IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 292 aa     Download sequence    Send to blast
MEISSITGLP DQEMMGDPTL LHQWHSDDSS LLPMAAAFGE TLQHHSFTYP NFNLITPMNQ  60
FQLGSNHMSQ FQLGLQKLKD EMGCPTINIT TPLDMISQGN LEDQNYVFKT CQEDHKKILT  120
RPKLSQPQDH IIAERKRREK LSQQFIALSA LVPGLQKMDK ASVLGDTIKY LKQLQEKVRA  180
LEEEQNLKKN VQSVVIVKKS QLGSFDKELP EIEARFCERN VLIRVHCEKS KGVVEKTIHE  240
IEKLHLKVIN STALTFGSCA LDITIIAQMD VGFCMTVKDL VRKLRSAFTS FM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A7e-14126190569Transcription factor MYC2
5gnj_B7e-14126190569Transcription factor MYC2
5gnj_E7e-14126190569Transcription factor MYC2
5gnj_F7e-14126190569Transcription factor MYC2
5gnj_G7e-14126190569Transcription factor MYC2
5gnj_I7e-14126190569Transcription factor MYC2
5gnj_M7e-14126190569Transcription factor MYC2
5gnj_N7e-14126190569Transcription factor MYC2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1133138ERKRRE
2134139RKRREK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Lja.182670.0root
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in flowers. {ECO:0000269|PubMed:12679534}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj0g3v0292969.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By ethylene (ACC) and jasmonic acid (JA) treatments. {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1383011e-151BT138301.1 Lotus japonicus clone JCVI-FLLj-20A23 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027348506.11e-144transcription factor bHLH19-like
SwissprotQ9T0722e-54BH025_ARATH; Transcription factor bHLH25
TrEMBLA0A371FE141e-142A0A371FE14_MUCPR; Transcription factor bHLH25 (Fragment)
STRINGGLYMA07G30420.21e-132(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF45534164
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.18e-57bHLH family protein