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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lj0g3v0292459.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
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Family | E2F/DP | ||||||||
Protein Properties | Length: 118aa MW: 13834.7 Da PI: 5.0354 | ||||||||
Description | E2F/DP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | E2F_TDP | 80.5 | 1.5e-25 | 1 | 74 | 14 | 71 |
E2F_TDP 14 lklleksee.givtlnevakeLvse................dvknkrRRiYDilNVLealnliekkekneirwkg 71 +k++ek+e+ g++t+neva+eLv+e d+kn+rRR+YD+lNVL+a+++i+k +k+ei+wkg Lj0g3v0292459.1 1 MKVCEKVESkGRTTYNEVADELVAEfadpsnstlspdqqqyDEKNIRRRVYDALNVLMAMDIISK-DKKEIQWKG 74 589****999*******************************************************.*******98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.10 | 1.4E-40 | 1 | 79 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SuperFamily | SSF46785 | 5.98E-20 | 1 | 75 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SMART | SM01372 | 9.7E-26 | 1 | 74 | IPR003316 | E2F/DP family, winged-helix DNA-binding domain |
Pfam | PF02319 | 1.0E-22 | 1 | 74 | IPR003316 | E2F/DP family, winged-helix DNA-binding domain |
SuperFamily | SSF144074 | 7.32E-9 | 80 | 118 | No hit | No description |
Pfam | PF08781 | 1.0E-7 | 82 | 118 | IPR014889 | Transcription factor DP, C-terminal |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005667 | Cellular Component | transcription factor complex | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 118 aa Download sequence Send to blast |
MKVCEKVESK GRTTYNEVAD ELVAEFADPS NSTLSPDQQQ YDEKNIRRRV YDALNVLMAM 60 DIISKDKKEI QWKGLPRTSL NDIEELKTER LGLRNRIEKK RAYLQELEDQ YIGLQNLI |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1cf7_B | 2e-33 | 1 | 79 | 17 | 93 | PROTEIN (TRANSCRIPTION FACTOR DP-2) |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Lja.9911 | 0.0 | cell culture| pod| root |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Expressed during the whole cell cycle. {ECO:0000269|PubMed:11669580}. | |||||
Uniprot | TISSUE SPECIFICITY: Ubiquitous. {ECO:0000269|PubMed:16920782}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Involved in the regulation of the G1/S transition. Increases the DNA binding activity of E2F proteins after heterodimerization. The complex DPB/E2FC restricts cell division and lateral root initiation and may function as a negative regulator of E2F-regulated genes. The interaction with SKP2A is controlled by auxin. {ECO:0000269|PubMed:11891240, ECO:0000269|PubMed:16920782}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lj0g3v0292459.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT093795 | 1e-109 | BT093795.1 Soybean clone JCVI-FLGm-17D20 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027355595.1 | 4e-77 | transcription factor-like protein DPB | ||||
Swissprot | Q9FNY2 | 2e-70 | DPB_ARATH; Transcription factor-like protein DPB | ||||
TrEMBL | A0A067EFJ5 | 3e-75 | A0A067EFJ5_CITSI; Uncharacterized protein | ||||
TrEMBL | A0A067EGD1 | 3e-75 | A0A067EGD1_CITSI; Uncharacterized protein | ||||
TrEMBL | A0A2I4ECM3 | 6e-75 | A0A2I4ECM3_JUGRE; transcription factor-like protein DPB isoform X2 | ||||
TrEMBL | A0A2I4ECM4 | 5e-75 | A0A2I4ECM4_JUGRE; transcription factor-like protein DPB isoform X1 | ||||
STRING | XP_006491709.1 | 5e-75 | (Citrus sinensis) | ||||
STRING | XP_006428365.1 | 5e-75 | (Citrus clementina) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3321 | 33 | 66 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G03415.1 | 9e-73 | Transcription factor DP |