PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj0g3v0292139.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family B3
Protein Properties Length: 462aa    MW: 51919.9 Da    PI: 7.4355
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj0g3v0292139.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B364.12.2e-20101191199
                      EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
               B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 
                      f+k l++s+v +  ++ lp  f+++h  +  +++t+tledesg++++ k+i +k++    l++GW++F   ++L+egD+vvF+l++ ++f  +v
  Lj0g3v0292139.1 101 FVKSLVRSHVASCFWMGLPVAFCKRHLPD--KDTTITLEDESGKEYKTKYIACKTG----LSAGWRQFSAVHKLQEGDVVVFQLVEPTKF--KV 186
                      89************************534..5679***************777776....***********************9876666..88 PP

                      EEE-S CS
               B3  95 kvfrk 99 
                       ++r+
  Lj0g3v0292139.1 187 YIVRA 191
                      88876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.0E-2296192IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.94E-2496192IPR015300DNA-binding pseudobarrel domain
CDDcd100172.81E-2899190No hitNo description
PROSITE profilePS5086313.761101192IPR003340B3 DNA binding domain
SMARTSM010192.9E-26101192IPR003340B3 DNA binding domain
PfamPF023621.5E-17101191IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 462 aa     Download sequence    Send to blast
MVVVDERRGD WMVNNKEHND QGVTVAFHGE DMYEDAPHAH YSMMSPLHMA LSDEAQSQKH  60
GSGSPIRAAT DGTSSRGEAL STAVIRAQEI QSKLVPDFPS FVKSLVRSHV ASCFWMGLPV  120
AFCKRHLPDK DTTITLEDES GKEYKTKYIA CKTGLSAGWR QFSAVHKLQE GDVVVFQLVE  180
PTKFKVYIVR ANKLRELDGA LPNLETSIKQ KVGGRNSTNT EAVPSNSSKR KHGKSVPQED  240
QKKKKTIVSR MGPKARQSAE PSENSSEDAL SEILEGFRML QFKDIRGFGH FSILVDGVAI  300
DAELSNEVRN KYYKLCHSQQ AFLHENLIKG MDYMLIAGII SETVNIADAI KVSVMSTPRV  360
EFTNWDKTLH AFELLGMNVA FLRARLRRLV SLAYETEDAS EARRYLAYRA ENSRADEELK  420
NMETKLEELK GACNDFGAYL ESLKCKAESY QHQFQKEVAA PW
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1228244KRKHGKSVPQEDQKKKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj0g3v0292139.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCU5711522e-57CU571152.5 M.truncatula DNA sequence from clone MTH2-44F3 on chromosome 3, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027347376.10.0B3 domain-containing protein Os01g0234100-like isoform X2
TrEMBLA0A1S2YSD00.0A0A1S2YSD0_CICAR; B3 domain-containing protein Os01g0234100-like
STRINGXP_004509147.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF10073398
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G42700.11e-35B3 family protein