PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj0g3v0290279.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family C3H
Protein Properties Length: 281aa    MW: 32784.5 Da    PI: 8.9907
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj0g3v0290279.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH308.7e-1093120126
                      --S---SGGGGTS..--TTTTT-SS-SS CS
          zf-CCCH   1 yktelCrffartG..tCkyGdrCkFaHg 26 
                      +k ++C  ++++G  tC++G  C+F+H+
  Lj0g3v0290279.1  93 WKVAICGEYMKSGfkTCSHGTACNFIHC 120
                      899************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.70.3305.2E-123988IPR012677Nucleotide-binding alpha-beta plait domain
SuperFamilySSF549283.1E-93990IPR012677Nucleotide-binding alpha-beta plait domain
PRINTSPR018481.2E-154769IPR009145U2 auxiliary factor small subunit
PRINTSPR018481.2E-157498IPR009145U2 auxiliary factor small subunit
PROSITE profilePS5010310.46592122IPR000571Zinc finger, CCCH-type
SMARTSM003563.4E-492121IPR000571Zinc finger, CCCH-type
PfamPF006424.9E-793120IPR000571Zinc finger, CCCH-type
PRINTSPR018481.2E-15112124IPR009145U2 auxiliary factor small subunit
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000398Biological ProcessmRNA splicing, via spliceosome
GO:0089701Cellular ComponentU2AF
GO:0000166Molecular Functionnucleotide binding
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 281 aa     Download sequence    Send to blast
MYGTCENKYM RVLSSCPFFI SLHVPPAQLL ASVLILISVH HFQVCKNGSF HLRGNVYVQY  60
KLLDSALLAY NSVNGRYFAG KQVSCEFINL TRWKVAICGE YMKSGFKTCS HGTACNFIHC  120
FRNPGGDYEW ADSDKPPPKF WVRKMAALFG YSDDYEILRE QGNLSGQSYR NMSKTDSDRQ  180
HSRRSQSGEM DQLNSGYSDR RKHEDERNQR TPNEGKKRRD RTPDTDSDKE WLEEEEDRVK  240
HHRYTRKSSI NKNNKRSHEE DSDVDWTTKT RGNKKQHDRE G
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1199218RRKHEDERNQRTPNEGKKRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj0g3v0290279.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150382e-47AP015038.1 Vigna angularis var. angularis DNA, chromosome 5, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007148590.11e-121hypothetical protein PHAVU_006G221300g
SwissprotQ9SY748e-68C3H5_ARATH; Zinc finger CCCH domain-containing protein 5
TrEMBLA0A371HXL61e-119A0A371HXL6_MUCPR; Zinc finger CCCH domain-containing protein 5 (Fragment)
TrEMBLV7BRH31e-120V7BRH3_PHAVU; Uncharacterized protein
STRINGXP_007148590.11e-120(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF47132433
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10320.13e-67C3H family protein
Publications ? help Back to Top
  1. Lorković ZJ,Wieczorek Kirk DA,Lambermon MH,Filipowicz W
    Pre-mRNA splicing in higher plants.
    Trends Plant Sci., 2000. 5(4): p. 160-7
    [PMID:10740297]
  2. Domon C,Lorković ZJ,Valcárcel J,Filipowicz W
    Multiple forms of the U2 small nuclear ribonucleoprotein auxiliary factor U2AF subunits expressed in higher plants.
    J. Biol. Chem., 1998. 273(51): p. 34603-10
    [PMID:9852132]