PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj0g3v0287339.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family LBD
Protein Properties Length: 175aa    MW: 19534.1 Da    PI: 6.6531
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj0g3v0287339.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260140.26.7e-4461051100
           DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 
                      +Ca+Ck+lrr+C+++C++apyfp+++p+kfa+vhk+FGasn++k+l++lp ++r da+sslv+eA+ar+rdPvyG+vg i+ lq q++ql+ +l
  Lj0g3v0287339.1   6 PCASCKLLRRRCTQECIFAPYFPSDDPRKFAIVHKVFGASNISKMLQELPVHQRADAVSSLVFEANARVRDPVYGCVGAISYLQDQVSQLQMQL 99 
                      7********************************************************************************************* PP

           DUF260  95 allkee 100
                      a++++e
  Lj0g3v0287339.1 100 AVAQTE 105
                      *99987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089126.375106IPR004883Lateral organ boundaries, LOB
PfamPF031951.3E-436103IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 175 aa     Download sequence    Send to blast
MGGSSPCASC KLLRRRCTQE CIFAPYFPSD DPRKFAIVHK VFGASNISKM LQELPVHQRA  60
DAVSSLVFEA NARVRDPVYG CVGAISYLQD QVSQLQMQLA VAQTEILCIQ MQQDPAASLP  120
VHQVDHQDVK SLLLSDHNNY QILPQQYLSF PSSSSSSSSV FQDSYDSLKR ESFWT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A3e-5021217128LOB family transfactor Ramosa2.1
5ly0_B3e-5021217128LOB family transfactor Ramosa2.1
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed predominantly in roots, and at low levels in shoots, floral stems and open flowers. {ECO:0000269|PubMed:12068116}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj0g3v0287339.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150381e-53AP015038.1 Vigna angularis var. angularis DNA, chromosome 5, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003537315.26e-94LOB domain-containing protein 12
RefseqXP_020207951.11e-94LOB domain-containing protein 12
SwissprotQ8LBW36e-74LBD12_ARATH; LOB domain-containing protein 12
TrEMBLA0A151QRV13e-93A0A151QRV1_CAJCA; LOB domain-containing protein 12
STRINGGLYMA11G29450.11e-93(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF16643497
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G30130.19e-75LBD family protein
Publications ? help Back to Top
  1. Penfield S, et al.
    Reserve mobilization in the Arabidopsis endosperm fuels hypocotyl elongation in the dark, is independent of abscisic acid, and requires PHOSPHOENOLPYRUVATE CARBOXYKINASE1.
    Plant Cell, 2004. 16(10): p. 2705-18
    [PMID:15367715]