PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj0g3v0283859.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family GRAS
Protein Properties Length: 462aa    MW: 51446.8 Da    PI: 6.3489
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj0g3v0283859.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS295.31.5e-90574462373
             GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfsh 95 
                      ++lLl+cA a++s++ +laq++++ l++ asp+gd++qRl+a f++AL +r +r ++++++   +++ ++   s +++ l+ ++++ P+++f++
  Lj0g3v0283859.1  57 EKLLLHCASALESNNITLAQQVMWVLNNVASPQGDTNQRLTAWFLRALISRASRICPSVMSFKGSNNIPR--RSMTVTELTGYVDLIPWHRFGF 148
                      689***************************************************9999887554444442..2222233445************ PP

             GRAS  96 ltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg...skeeleetgerLakfAeelgvpfefnvl..... 181
                       + N+ Il+av g +rvH++Df+i+ ++QWp++++aLa+Rpeg+pslRiT+ +   ++    + +++e+g rL +fA+  +vpfef+v+     
  Lj0g3v0283859.1 149 CASNNEILKAVTGFQRVHVLDFSITPCMQWPTFIDALAKRPEGSPSLRITVPSFRPQVpplVNISIHEVGLRLGNFAKFRDVPFEFHVIgdenl 242
                      **************************************************9988666689999******************************* PP

             GRAS 182 ..............vakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerfleal 261
                                     ++ l+ l+++ L+++++Eal++n++  l +l d++ +++s rd++L+l+k+lsP++v +v++++d++++s++ r++ ++
  Lj0g3v0283859.1 243 lpseqlsnestrfqFESLLSLLNPSVLNIREDEALVINCQNWLRYLSDDNRNSNSLRDAFLSLIKGLSPQIVLLVDEDCDLSASSLVSRITACF 336
                      ****99888877766667788899999******************************************************************* PP

             GRAS 262 eyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveees 355
                      ++ +  fd+l++ lp++s++r+  E   +g++i+n++  eg +r+er e+  k ++r++++G+ +vp+ + ++k++k ll +++  g+ ++ ++
  Lj0g3v0283859.1 337 NHLWIPFDALDTFLPKDSSQRTEFESD-IGQKIENIIGFEGYQRIERLESGVKMSQRMKNSGYFSVPFCDGTVKEVKGLLDEHA-GGWGMKRDE 428
                      ***************************.********************************************************.78999**** PP

             GRAS 356 gslvlgWkdrpLvsvSaW 373
                      g lvl+Wk+++ v+++aW
  Lj0g3v0283859.1 429 GMLVLTWKGNSCVFATAW 446
                      ****************** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098542.74530428IPR005202Transcription factor GRAS
PfamPF035145.4E-8857446IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 462 aa     Download sequence    Send to blast
MQATSSHSPM KAELKPPTSI SFQNPTTTPL FNTPHTSTPL SGALKGCLGS LDGACIEKLL  60
LHCASALESN NITLAQQVMW VLNNVASPQG DTNQRLTAWF LRALISRASR ICPSVMSFKG  120
SNNIPRRSMT VTELTGYVDL IPWHRFGFCA SNNEILKAVT GFQRVHVLDF SITPCMQWPT  180
FIDALAKRPE GSPSLRITVP SFRPQVPPLV NISIHEVGLR LGNFAKFRDV PFEFHVIGDE  240
NLLPSEQLSN ESTRFQFESL LSLLNPSVLN IREDEALVIN CQNWLRYLSD DNRNSNSLRD  300
AFLSLIKGLS PQIVLLVDED CDLSASSLVS RITACFNHLW IPFDALDTFL PKDSSQRTEF  360
ESDIGQKIEN IIGFEGYQRI ERLESGVKMS QRMKNSGYFS VPFCDGTVKE VKGLLDEHAG  420
GWGMKRDEGM LVLTWKGNSC VFATAWVPSE MRDHVGMDAT LS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_B1e-545044981475Protein SHORT-ROOT
5b3h_B4e-555044927421Protein SHORT-ROOT
5b3h_E4e-555044927421Protein SHORT-ROOT
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj0g3v0283859.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020237826.10.0scarecrow-like protein 32
TrEMBLA0A151RP290.0A0A151RP29_CAJCA; Scarecrow-like protein 32
STRINGXP_007149938.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF100743142
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49950.11e-113GRAS family protein