PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj0g3v0283609.2
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family bHLH
Protein Properties Length: 278aa    MW: 30462 Da    PI: 7.0761
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj0g3v0283609.2genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH15.82.6e-051682061154
                      HHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
              HLH  11 rRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                       R +++ +++  L++l+ +      +K + a++L +A eYIk L
  Lj0g3v0283609.2 168 VRKEKMGDRITALQQLVSPF-----GKTDTASVLSEALEYIKFL 206
                      5778999**********998.....8****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088812.049157206IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.99E-6167210No hitNo description
SuperFamilySSF474593.53E-11167221IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.2E-8171214IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 278 aa     Download sequence    Send to blast
MLQENLNSSS SEQQILFTPE ESSSNDEYNK QVVNRGSFSL DQNQGLLSTF QIDSSSALYG  60
NPSSMLQGLL GPENNNNMGF PHYGSNSHEV PQFLRASPPN PQPPLMSNQL HFTNNAPFWN  120
ASEAAAPIKD NISEVLRDSG VVRKKSGSEP PPKRTRNETP SPMPAFKVRK EKMGDRITAL  180
QQLVSPFGKT DTASVLSEAL EYIKFLHEQV TVLSTPYMKS GAPVQIQQSS GKSKVGEGPK  240
QDLRSRGLCL VPVSSTFPMT HETTVDFWTP TFGGGTSR
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj0g3v0283609.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150403e-33AP015040.1 Vigna angularis var. angularis DNA, chromosome 7, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003539573.21e-119transcription factor bHLH123 isoform X2
RefseqXP_006592891.11e-119transcription factor bHLH123 isoform X1
RefseqXP_027342788.11e-119transcription factor bHLH123-like
RefseqXP_028192315.11e-119transcription factor bHLH123-like isoform X1
RefseqXP_028192316.11e-119transcription factor bHLH123-like isoform X2
SwissprotQ8GXT34e-60BH123_ARATH; Transcription factor bHLH123
TrEMBLA0A371F9301e-119A0A371F930_MUCPR; Transcription factor bHLH123 (Fragment)
STRINGGLYMA12G34490.11e-119(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G20640.13e-62bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]