PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj0g3v0283609.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family bHLH
Protein Properties Length: 299aa    MW: 32886.7 Da    PI: 8.4526
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj0g3v0283609.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH15.62.9e-051912291154
                      HHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
              HLH  11 rRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                       R +++ +++  L++l+ +      +K + a++L +A eYIk L
  Lj0g3v0283609.1 191 VRKEKMGDRITALQQLVSPF-----GKTDTASVLSEALEYIKFL 229
                      5778999**********998.....8****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088812.049180229IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474596.94E-10190237IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.31E-6190233No hitNo description
Gene3DG3DSA:4.10.280.106.7E-8194233IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 299 aa     Download sequence    Send to blast
MLQENLNSSS SEQQILFTPE ESSSNDEYNK QVVNRGSFSL DQNQGLLSTF QIDSSSALYG  60
NPSSMLQGLL GPENNNNMGF PHYGSNSHEV PQFLRASPPN PQPPLMSNQL HFTNNAPFWN  120
ASEAAAPIKD VRSSFFPSMQ PSFSTPNFHV QSKNISEVLR DSGVVRKKSG SEPPPKRTRN  180
ETPSPMPAFK VRKEKMGDRI TALQQLVSPF GKTDTASVLS EALEYIKFLH EQVLSTPYMK  240
SGAPVQIQQS SGKSKVGEGP KQDLRSRGLC LVPVSSTFPM THETTVDFWT PTFGGGTSR
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj0g3v0283609.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150404e-33AP015040.1 Vigna angularis var. angularis DNA, chromosome 7, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006592892.11e-137transcription factor bHLH123 isoform X3
RefseqXP_028192317.11e-137transcription factor bHLH123-like isoform X3
SwissprotQ8GXT32e-66BH123_ARATH; Transcription factor bHLH123
TrEMBLA0A445HTJ61e-134A0A445HTJ6_GLYSO; Transcription factor bHLH123 isoform A
TrEMBLI1LUT61e-134I1LUT6_SOYBN; Uncharacterized protein
STRINGGLYMA12G34490.11e-135(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G20640.13e-62bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]