PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj0g3v0283229.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family bHLH
Protein Properties Length: 160aa    MW: 18054.9 Da    PI: 9.9863
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj0g3v0283229.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH452e-141056354
                     HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
              HLH  3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
                     ++h e+Er+RR+++N++f  Lr+ +P+       K++Ka+ L  Av YI++L
  Lj0g3v0283229.1 10 VNHVEAERQRREKLNQKFYALRSAVPTV-----SKMDKASLLSDAVSYINEL 56
                     589************************6.....5****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474593.14E-18570IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088817.142756IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.56E-121060No hitNo description
PfamPF000104.2E-121156IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.4E-171169IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.0E-141362IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 160 aa     Download sequence    Send to blast
MFRRGGQFSV NHVEAERQRR EKLNQKFYAL RSAVPTVSKM DKASLLSDAV SYINELKAKI  60
NCLERGLENR AESSKQETSE DVKTVAVDVK ILGTEAIISV QSLNVNYPIA RLMDAIRDLR  120
LKILHATMSN VKEMMLQDVV VKAPHGMNEE AIKNAITQRL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A1e-24560257Transcription factor MYC2
5gnj_B1e-24560257Transcription factor MYC2
5gnj_E1e-24560257Transcription factor MYC2
5gnj_F1e-24560257Transcription factor MYC2
5gnj_G1e-24560257Transcription factor MYC2
5gnj_I1e-24560257Transcription factor MYC2
5gnj_M1e-24560257Transcription factor MYC2
5gnj_N1e-24560257Transcription factor MYC2
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Highly expressed in trichomes and at lower levels in leaves and flowers (PubMed:24884371). Expressed at low levels in roots, stems, leaves, flowers and fruits (PubMed:15231736). {ECO:0000269|PubMed:15231736, ECO:0000269|PubMed:24884371}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds to the G-box motif (5'-AACGTG-3') found in a number of promoters of jasmonate-induced genes (PubMed:15231736). Transcription activator involved in the transcriptional regulation of terpene biosynthesis in glandular trichomes (PubMed:24884371, PubMed:30518626). Binds to the promoter of the linalool synthase TPS5 and promotes TPS5 gene transactivation (PubMed:24884371). Acts synergistically with EOT1 in the transactivation of TPS5 (PubMed:24884371). Involved in type VI glandular trichome development (PubMed:30518626). Involved in the activation of terpene synthases required for volatile mono- and sesquiterpenes synthesis by the glandular cells of type VI trichomes (PubMed:30518626). {ECO:0000269|PubMed:15231736, ECO:0000269|PubMed:24884371, ECO:0000269|PubMed:30518626}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj0g3v0283229.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by methyl jasmonate and wounding. {ECO:0000269|PubMed:15231736}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027345915.19e-70transcription factor MYC3-like
SwissprotA0A060KY902e-39MYC1_SOLLC; Transcription factor MYC1
TrEMBLA0A151R1Y86e-65A0A151R1Y8_CAJCA; Transcription factor bHLH14
STRINGXP_007151965.19e-63(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF84134116
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32640.18e-39bHLH family protein
Publications ? help Back to Top
  1. Tomato Genome Consortium
    The tomato genome sequence provides insights into fleshy fruit evolution.
    Nature, 2012. 485(7400): p. 635-41
    [PMID:22660326]
  2. Spyropoulou EA,Haring MA,Schuurink RC
    RNA sequencing on Solanum lycopersicum trichomes identifies transcription factors that activate terpene synthase promoters.
    BMC Genomics, 2014. 15: p. 402
    [PMID:24884371]
  3. Xu J, et al.
    SlMYC1 Regulates Type VI Glandular Trichome Formation and Terpene Biosynthesis in Tomato Glandular Cells.
    Plant Cell, 2018. 30(12): p. 2988-3005
    [PMID:30518626]