PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lj0g3v0283229.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
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Family | bHLH | ||||||||
Protein Properties | Length: 160aa MW: 18054.9 Da PI: 9.9863 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 45 | 2e-14 | 10 | 56 | 3 | 54 |
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 ++h e+Er+RR+++N++f Lr+ +P+ K++Ka+ L Av YI++L Lj0g3v0283229.1 10 VNHVEAERQRREKLNQKFYALRSAVPTV-----SKMDKASLLSDAVSYINEL 56 589************************6.....5****************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 3.14E-18 | 5 | 70 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 17.142 | 7 | 56 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 2.56E-12 | 10 | 60 | No hit | No description |
Pfam | PF00010 | 4.2E-12 | 11 | 56 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.4E-17 | 11 | 69 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.0E-14 | 13 | 62 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 160 aa Download sequence Send to blast |
MFRRGGQFSV NHVEAERQRR EKLNQKFYAL RSAVPTVSKM DKASLLSDAV SYINELKAKI 60 NCLERGLENR AESSKQETSE DVKTVAVDVK ILGTEAIISV QSLNVNYPIA RLMDAIRDLR 120 LKILHATMSN VKEMMLQDVV VKAPHGMNEE AIKNAITQRL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5gnj_A | 1e-24 | 5 | 60 | 2 | 57 | Transcription factor MYC2 |
5gnj_B | 1e-24 | 5 | 60 | 2 | 57 | Transcription factor MYC2 |
5gnj_E | 1e-24 | 5 | 60 | 2 | 57 | Transcription factor MYC2 |
5gnj_F | 1e-24 | 5 | 60 | 2 | 57 | Transcription factor MYC2 |
5gnj_G | 1e-24 | 5 | 60 | 2 | 57 | Transcription factor MYC2 |
5gnj_I | 1e-24 | 5 | 60 | 2 | 57 | Transcription factor MYC2 |
5gnj_M | 1e-24 | 5 | 60 | 2 | 57 | Transcription factor MYC2 |
5gnj_N | 1e-24 | 5 | 60 | 2 | 57 | Transcription factor MYC2 |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Highly expressed in trichomes and at lower levels in leaves and flowers (PubMed:24884371). Expressed at low levels in roots, stems, leaves, flowers and fruits (PubMed:15231736). {ECO:0000269|PubMed:15231736, ECO:0000269|PubMed:24884371}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that binds to the G-box motif (5'-AACGTG-3') found in a number of promoters of jasmonate-induced genes (PubMed:15231736). Transcription activator involved in the transcriptional regulation of terpene biosynthesis in glandular trichomes (PubMed:24884371, PubMed:30518626). Binds to the promoter of the linalool synthase TPS5 and promotes TPS5 gene transactivation (PubMed:24884371). Acts synergistically with EOT1 in the transactivation of TPS5 (PubMed:24884371). Involved in type VI glandular trichome development (PubMed:30518626). Involved in the activation of terpene synthases required for volatile mono- and sesquiterpenes synthesis by the glandular cells of type VI trichomes (PubMed:30518626). {ECO:0000269|PubMed:15231736, ECO:0000269|PubMed:24884371, ECO:0000269|PubMed:30518626}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lj0g3v0283229.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by methyl jasmonate and wounding. {ECO:0000269|PubMed:15231736}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027345915.1 | 9e-70 | transcription factor MYC3-like | ||||
Swissprot | A0A060KY90 | 2e-39 | MYC1_SOLLC; Transcription factor MYC1 | ||||
TrEMBL | A0A151R1Y8 | 6e-65 | A0A151R1Y8_CAJCA; Transcription factor bHLH14 | ||||
STRING | XP_007151965.1 | 9e-63 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF841 | 34 | 116 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G32640.1 | 8e-39 | bHLH family protein |
Publications ? help Back to Top | |||
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