PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj0g3v0282449.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family bHLH
Protein Properties Length: 274aa    MW: 30979.1 Da    PI: 5.4298
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj0g3v0282449.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH23.87.8e-08167214455
                      HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      +h+ +Er RR +iN+++  L+ ++P +     k +  a +L + ++Y++sLq
  Lj0g3v0282449.1 167 SHSLAERVRRGKINEKLRCLQNIVPGC----YKTMGMAVMLDEIINYVQSLQ 214
                      8*************************9....35599999**********998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000834.74E-9161218No hitNo description
SuperFamilySSF474591.44E-15161230IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.2E-15163222IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088814.723163213IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.9E-5167214IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.7E-7169219IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006351Biological Processtranscription, DNA-templated
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 274 aa     Download sequence    Send to blast
MAEITENLQS IRPSFPFLDI DPSMELLSQF MGMNPQHVMD NSNMNMNMQN LMPFSCDSIL  60
GPEEPEFPEN LEGTFPGLVH HVSHNAFPVS LPIFPAEDEI IEGKKRKMIM DIQETSSANS  120
TPAVSESGSR IKNNSGRGKR AKSNVTEEEK EKEVVHVRAR RGQATDSHSL AERVRRGKIN  180
EKLRCLQNIV PGCYKTMGMA VMLDEIINYV QSLQHQVEFL SLKLTAASTY YDFNSETDAI  240
ETMQRARASE AKELARYKRE EYGGISCFQP TWPL
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in stems. {ECO:0000269|PubMed:12679534}.
Functional Description ? help Back to Top
Source Description
UniProtPositive regulator of brassinosteroid signaling. {ECO:0000269|PubMed:12454087}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj0g3v0282449.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by brassinosteroid, auxin and ethylene, and repressed by abscisic acid. Insensitive to gibberellic acid. {ECO:0000269|PubMed:12454087}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1478680.0BT147868.1 Lotus japonicus clone JCVI-FLLj-7L15 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007154151.11e-169hypothetical protein PHAVU_003G094700g
SwissprotQ8GWK71e-62BEE3_ARATH; Transcription factor BEE 3
TrEMBLI3T5700.0I3T570_LOTJA; Uncharacterized protein
STRINGXP_007154151.11e-168(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF33603467
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G73830.11e-64BR enhanced expression 3
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]