PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj0g3v0279629.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family GeBP
Protein Properties Length: 389aa    MW: 43533.3 Da    PI: 4.6789
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj0g3v0279629.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF573116.31.7e-3692187297
           DUF573   2 lfqrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelskki 95 
                      lfqrlw++eDei lLqG++++ +++g+s ++d+  fy+++k ++++ ++k+qlveK+rrLKkK+++  +k++sgke+sf+++hdq +fe+s+ki
  Lj0g3v0279629.1  92 LFQRLWTDEDEIGLLQGFLEYSSQRGSSHHNDTALFYDQIKWKLQLGFNKNQLVEKLRRLKKKYRNVLSKISSGKEFSFKSPHDQATFEISRKI 185
                      79******************************************************************************************** PP

           DUF573  96 Wg 97 
                      W 
  Lj0g3v0279629.1 186 WS 187
                      *6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045041.7E-3393187IPR007592Protein of unknown function DUF573
Sequence ? help Back to Top
Protein Sequence    Length: 389 aa     Download sequence    Send to blast
MASDRNDTVF PEEYLGDDDQ TLEDEEDLDD DVLGEPDEDE DEEPEPSPYP ISAAAASVTV  60
ALPATVIPES PDPKRPRTEE KKATPLDDSR RLFQRLWTDE DEIGLLQGFL EYSSQRGSSH  120
HNDTALFYDQ IKWKLQLGFN KNQLVEKLRR LKKKYRNVLS KISSGKEFSF KSPHDQATFE  180
ISRKIWSVAA PIAGPGEDDD EINLNSNPNP NYGHLNEAAA IEKKTPPSRK RSRPLAQLGV  240
IKIEEKEEKR ELNDDSVLNK DKDNNYNLNN HSEDYNGNIG NGRHSSMKGL IEETVRSCVT  300
PVLKELASGA NSMGSPFGFG GRGFGVGGFE SNHLPLGLLN FGVGEMVKDE KWRKQHILEL  360
EVYSKRLELV QGEIKIALEE LRSAGAGGR
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17278PKRPRTE
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Lja.104850.0cell culture| root
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj0g3v0279629.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020203836.11e-128probable transcription factor At5g28040
SwissprotF4K5T48e-84STKLU_ARATH; Probable transcription factor At5g28040
TrEMBLA0A151U5901e-127A0A151U590_CAJCA; Uncharacterized protein
STRINGXP_004495782.11e-119(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF32553365
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G28040.14e-73DNA-binding storekeeper protein-related transcriptional regulator
Publications ? help Back to Top
  1. García-Cano E,Hak H,Magori S,Lazarowitz SG,Citovsky V
    The Agrobacterium F-Box Protein Effector VirF Destabilizes the Arabidopsis GLABROUS1 Enhancer/Binding Protein-Like Transcription Factor VFP4, a Transcriptional Activator of Defense Response Genes.
    Mol. Plant Microbe Interact., 2018. 31(5): p. 576-586
    [PMID:29264953]