PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus

Family

HB-other

Protein Properties

Length: 144aa MW: 16639.9 Da PI: 9.996

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Lj0g3v0278949.2	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	62.3	7e-20	21	79	3	57
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 k ++t+eq+e+Le+l++++++p+ +r++L +++ +++ +q+kvWFqNrR +ek+ Lj0g3v0278949.2 21 KYVRYTPEQVEALERLYHECPKPTSLRRQQLIRECpilsHIEPKQIKVWFQNRRCREKQ 79 5679*****************************************************97 PP
2	bZIP_1	21.8	4.1e-07	73	116	18	61
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 18 rrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklks 61 rr+R++ ++e +L+ +L+a Nk L +e+++l+k+v++l Lj0g3v0278949.2 73 RRCREKQRKESSRLQAVNRKLTAMNKLLMEENDRLQKQVSQLVY 116 9***************************************9965 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	4.6E-20	4	76	IPR009057	Homeodomain-like
PROSITE profile	PS50071	15.516	16	80	IPR001356	Homeobox domain
SMART	SM00389	1.7E-15	18	84	IPR001356	Homeobox domain
SuperFamily	SSF46689	3.38E-18	20	83	IPR009057	Homeodomain-like
CDD	cd00086	9.08E-14	21	81	No hit	No description
Pfam	PF00046	2.0E-17	21	79	IPR001356	Homeobox domain
CDD	cd14686	6.38E-4	73	112	No hit	No description
Gene3D	G3DSA:1.20.5.170	5.1E-4	77	114	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0008289	Molecular Function	lipid binding

Sequence ? help Back to Top
Protein Sequence Length: 144 aa Download sequence Send to blast
MMAVSSGSSR DGSKVAMDNG KYVRYTPEQV EALERLYHEC PKPTSLRRQQ LIRECPILSH 60 IEPKQIKVWF QNRRCREKQR KESSRLQAVN RKLTAMNKLL MEENDRLQKQ VSQLVYENGF 120 FRQQTQNATL ATTDTSCDSG VTSG

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Highly expressed the developing vascular elements and the adaxial portion of cotyledons. Expressed in developing ovules, stamens and carpels. Expressed in procambium and shoot meristem. {ECO:0000269\|PubMed:14701930, ECO:0000269\|PubMed:15705957}.

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in the regulation of meristem development to promote lateral organ formation. May regulates procambial and vascular tissue formation or maintenance, and vascular development in inflorescence stems. {ECO:0000269\|PubMed:15598805, ECO:0000269\|PubMed:15705957, ECO:0000269\|PubMed:16617092}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Lj0g3v0278949.2

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By auxin. Repressed by miR165 and miR166. {ECO:0000269\|PubMed:15773855, ECO:0000269\|PubMed:16033795, ECO:0000269\|PubMed:16617092, ECO:0000269\|PubMed:17237362}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020217689.1	3e-87	homeobox-leucine zipper protein ATHB-8
Swissprot	Q9ZU11	4e-75	ATB15_ARATH; Homeobox-leucine zipper protein ATHB-15
TrEMBL	A0A072V3X8	9e-87	A0A072V3X8_MEDTR; Class III homeodomain leucine zipper protein
TrEMBL	A0A072VD23	4e-86	A0A072VD23_MEDTR; Class III homeodomain leucine zipper protein
TrEMBL	A0A2K3PB51	1e-87	A0A2K3PB51_TRIPR; Homeobox-leucine zipper protein ATHB-15-like
STRING	XP_009378434.1	8e-86	(Pyrus x bretschneideri)
STRING	AES73881	2e-85	(Medicago truncatula)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G52150.3	7e-78	HD-ZIP family protein

Publications ? help Back to Top
Yamada T,Sasaki Y,Hashimoto K,Nakajima K,Gasser CS CORONA, PHABULOSA and PHAVOLUTA collaborate with BELL1 to confine WUSCHEL expression to the nucellus in Arabidopsis ovules. Development, 2016. 143(3): p. 422-6 [PMID:26700684]