PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lj0g3v0276629.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
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Family | bHLH | ||||||||
Protein Properties | Length: 304aa MW: 33275.3 Da PI: 10.0376 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 41.7 | 2.1e-13 | 121 | 166 | 4 | 54 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 +h+ Er+RRd+iN+++ L+ l+P++ K +K+++L +A+eY+k L Lj0g3v0276629.1 121 THSLYERKRRDKINKKMRILKGLIPNC-----NKKDKVSMLDHAIEYLKTL 166 7999**********************9.....599**************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.280.10 | 2.0E-17 | 114 | 175 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 1.7E-17 | 116 | 176 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 16.069 | 117 | 166 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 2.40E-13 | 121 | 171 | No hit | No description |
Pfam | PF00010 | 5.6E-11 | 121 | 166 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.0E-12 | 123 | 172 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 304 aa Download sequence Send to blast |
MAATGKKALH HFVVIKGSSH ALTTLQGQKP LISDAQSEAV VGHNKTSSLA RLKAKGKAHS 60 NYHDEPLLVS SSFGYSNNTN LKRKHDEATC LSDNDEEPEY AVKEKLAGKG TKVKRSRNAD 120 THSLYERKRR DKINKKMRIL KGLIPNCNKK DKVSMLDHAI EYLKTLKLQL QIMSMGGGLC 180 MPLMMLSAAT NQMINTTHLP QFMGAGMGFR PQFPIAPLPG VTDNNGVGMF GFPNQVPPMP 240 NCHAPFIPMA GNTHTQPLVA TSTATKSAEN CCSVSKNSYL HGQAEHAIKQ SLNQEQIEKI 300 SDKC |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 125 | 130 | ERKRRD |
2 | 126 | 131 | RKRRDK |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Lja.20520 | 0.0 | root |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lj0g3v0276629.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027367852.1 | 1e-102 | transcription factor PIL1-like | ||||
TrEMBL | A0A371ET57 | 1e-100 | A0A371ET57_MUCPR; Transcription factor PIL1 (Fragment) | ||||
STRING | GLYMA10G27910.2 | 1e-98 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF13329 | 18 | 29 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G09530.2 | 1e-25 | phytochrome interacting factor 3 |