PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj0g3v0276629.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family bHLH
Protein Properties Length: 304aa    MW: 33275.3 Da    PI: 10.0376
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj0g3v0276629.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH41.72.1e-13121166454
                      HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
              HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                      +h+  Er+RRd+iN+++  L+ l+P++      K +K+++L +A+eY+k L
  Lj0g3v0276629.1 121 THSLYERKRRDKINKKMRILKGLIPNC-----NKKDKVSMLDHAIEYLKTL 166
                      7999**********************9.....599**************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.102.0E-17114175IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.7E-17116176IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088816.069117166IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.40E-13121171No hitNo description
PfamPF000105.6E-11121166IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.0E-12123172IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 304 aa     Download sequence    Send to blast
MAATGKKALH HFVVIKGSSH ALTTLQGQKP LISDAQSEAV VGHNKTSSLA RLKAKGKAHS  60
NYHDEPLLVS SSFGYSNNTN LKRKHDEATC LSDNDEEPEY AVKEKLAGKG TKVKRSRNAD  120
THSLYERKRR DKINKKMRIL KGLIPNCNKK DKVSMLDHAI EYLKTLKLQL QIMSMGGGLC  180
MPLMMLSAAT NQMINTTHLP QFMGAGMGFR PQFPIAPLPG VTDNNGVGMF GFPNQVPPMP  240
NCHAPFIPMA GNTHTQPLVA TSTATKSAEN CCSVSKNSYL HGQAEHAIKQ SLNQEQIEKI  300
SDKC
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1125130ERKRRD
2126131RKRRDK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Lja.205200.0root
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj0g3v0276629.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027367852.11e-102transcription factor PIL1-like
TrEMBLA0A371ET571e-100A0A371ET57_MUCPR; Transcription factor PIL1 (Fragment)
STRINGGLYMA10G27910.21e-98(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF133291829
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09530.21e-25phytochrome interacting factor 3