PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lj0g3v0276369.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
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Family | MYB | ||||||||
Protein Properties | Length: 324aa MW: 36789.2 Da PI: 5.6713 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 43.8 | 5.9e-14 | 18 | 65 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g W++eEd++l ++ G g+W+ +ar g+ R++k+c++rw +yl Lj0g3v0276369.1 18 KGLWSPEEDDKLMNYMLNSGQGCWSDVARNAGLQRCGKSCRLRWINYL 65 678*******************************************97 PP | |||||||
2 | Myb_DNA-binding | 52.4 | 1.2e-16 | 71 | 114 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg+++++E+el+++++ +lG++ W+ Ia++++ gRt++++k++w++ Lj0g3v0276369.1 71 RGAFSPQEEELIIHLHSLLGNR-WSQIAARLP-GRTDNEIKNFWNS 114 89********************.*********.***********97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 6.5E-23 | 11 | 68 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 14.441 | 13 | 65 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.13E-27 | 16 | 112 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.4E-9 | 17 | 67 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.2E-12 | 18 | 65 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 5.65E-8 | 21 | 65 | No hit | No description |
PROSITE profile | PS51294 | 25.918 | 66 | 120 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.9E-26 | 69 | 121 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 4.9E-16 | 70 | 118 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.0E-15 | 71 | 114 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.64E-11 | 73 | 113 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009751 | Biological Process | response to salicylic acid | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0050832 | Biological Process | defense response to fungus | ||||
GO:1901348 | Biological Process | positive regulation of secondary cell wall biogenesis | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 324 aa Download sequence Send to blast |
MRKPEPKNNN SNMTKLRKGL WSPEEDDKLM NYMLNSGQGC WSDVARNAGL QRCGKSCRLR 60 WINYLRPDLK RGAFSPQEEE LIIHLHSLLG NRWSQIAARL PGRTDNEIKN FWNSTIKKRL 120 KNLPSPNASE SSCEPNKKDH NNNGGFSFNS TQQDVDFIMP MFMTSSPSPT TTQATVLNTI 180 IERLPMLEHG IMNMPASGAG GFFNAPPRFL QSEIDNDHNN IKGFYLENGV FEGVPPLESV 240 IRTTTTSDHD LKVENKGDTN YSCYFDDINN IVNNCYISNN NKRPHENRGG VQEDLCPEEL 300 TMGEWDLEDL MKDVASFPFL DFSS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 7e-27 | 16 | 120 | 5 | 108 | B-MYB |
1h8a_C | 1e-26 | 16 | 120 | 25 | 128 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00599 | PBM | Transfer from AT5G12870 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lj0g3v0276369.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT140096 | 0.0 | BT140096.1 Lotus japonicus clone JCVI-FLLj-12H15 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020206225.1 | 1e-146 | transcription factor MYB83 | ||||
Refseq | XP_020209436.1 | 1e-146 | transcription factor MYB83 | ||||
Refseq | XP_020233183.1 | 1e-146 | transcription factor MYB83 | ||||
TrEMBL | I3SHZ9 | 0.0 | I3SHZ9_LOTJA; Uncharacterized protein | ||||
STRING | XP_007132019.1 | 1e-141 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF774 | 34 | 128 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G12870.1 | 3e-61 | myb domain protein 46 |