PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj0g3v0271999.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family MYB_related
Protein Properties Length: 668aa    MW: 73496 Da    PI: 4.811
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj0g3v0271999.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding38.62.6e-12617667148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqkyl 48 
                      +++WT  E+e l  +vk++Ggg+Wk+I        ++R++ ++k++w++ l
  Lj0g3v0271999.1 617 KLKWTSLEEETLRAGVKMFGGGNWKAIRDFYSnifENRSAVDLKDKWRNML 667
                      689*********************************************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.1E-12612668IPR009057Homeodomain-like
PROSITE profilePS5129417.146612668IPR017930Myb domain
SuperFamilySSF466891.12E-14613668IPR009057Homeodomain-like
SMARTSM007175.5E-6616668IPR001005SANT/Myb domain
PfamPF002492.2E-9617667IPR001005SANT/Myb domain
CDDcd116601.43E-18619668No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009901Biological Processanther dehiscence
GO:0010152Biological Processpollen maturation
GO:0043067Biological Processregulation of programmed cell death
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 668 aa     Download sequence    Send to blast
MDSDMSGWVI EFLLRSSVPD STIQKTLAAL PLSGADPRLK KTLLLRTLHS HLINASLSET  60
ALEILELLEQ LHLNDAVPVP DSLRRAYCPV AVECTVKCLA ASPDDPSGEY FSAVRRIWRG  120
RVAALSEAGR ASGLVSDDLE RWRDDVEAAL WDPRVSERIA GLNTRWVAMV EVRGYLKEAW  180
EIMGASFLDL MATGSKGKGL CLGGVCENDS VRKRGDGGLE CSAKRADSLE GVCENDSVRK  240
CGDGGIECSA KRANRNEIDD NDGLCLDGVC ENDSVRKRGG GGLECSAKCA DRNEVDDNEG  300
LRLEGACEND SVRKHGDGGL ECSGKRADMN EFDDNEGLHL EGVCENDSVR KCGGGGGLEC  360
SAKRADRSEF DDNEGLCLEG VCENDSVRKH GDGGLECSAK RADRNEVDGN DDNGTDDGAC  420
RMEGVTVTEE NQGKEQFEDT VDVPAKGNQV QKENIQLKRK QFVLQKCHRG VQISGAEEVV  480
PKKSRSNCDP LPSAEVKKVR ESLRSSSLEL QAVVTDPLPD ALHASEVVRS QLSMKDTKHE  540
PHIIENQSGD AYLPDPDACR SIVPFLPNNA DLRKESSVHC SNVDRPNLME RRSNAQTYEW  600
NDSIDNLPQV IQPRRRKLKW TSLEEETLRA GVKMFGGGNW KAIRDFYSNI FENRSAVDLK  660
DKWRNMLR
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1612616PRRRK
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj0g3v0271999.1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019418993.11e-175PREDICTED: uncharacterized protein LOC109329694 isoform X5
STRINGGLYMA11G30814.12e-91(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF28243260
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58340.24e-16MYB_related family protein