PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj0g3v0263419.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family C2H2
Protein Properties Length: 288aa    MW: 32485.2 Da    PI: 6.669
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj0g3v0263419.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.60.00025375123
                     EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                     y+C+ C + F++   L  H+++H
  Lj0g3v0263419.1 53 YSCSFCRREFRSAQALGGHMNVH 75
                     99*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576673.92E-65079No hitNo description
PROSITE profilePS5015711.2195380IPR007087Zinc finger, C2H2
SMARTSM003550.00985375IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002805575IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 288 aa     Download sequence    Send to blast
MEQGQCYWMH TKRKYSLSSN SLASSSLSWE EQAFAEDAAG SLVGGCTWPP RSYSCSFCRR  60
EFRSAQALGG HMNVHRKDRA RLKQPSSPQN NEILFPHDLE THQTPFSAPS LGNYLAPYPP  120
PVYDLAYKTN PNPDHNFLAS TSSPSPNSKP LLSPSINNSS SILHKISPLN SSGDRLYSQK  180
FDIEEVSKGM DARCMNEVSN EDDIDVAMSL NLVVCRAQLT PVQFESIQEA EDRNCKKRKR  240
IDASSSNDQF FQKSRSVDDR HVHHMQPKVF EFSPINIEEL DLELRLGN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1njq_A6e-134875229superman protein
2l1o_A6e-134875229Transcriptional regulator SUPERMAN
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj0g3v0263419.1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020238447.16e-91zinc finger protein 10
TrEMBLA0A151RLX91e-89A0A151RLX9_CAJCA; Putative transcriptional regulator RABBIT EARS
STRINGGLYMA01G24820.12e-83(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17763078
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37740.12e-26zinc-finger protein 10