 |
Plant Transcription
Factor Database
|
Transcription Factor Information
Basic
Information? help
Back to Top |
TF ID |
Lj0g3v0261659.1 |
Organism |
|
Taxonomic ID |
|
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
|
Family |
C3H |
Protein Properties |
Length: 279aa MW: 32337.4 Da PI: 6.8806 |
Description |
C3H family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Lj0g3v0261659.1 | genome | Kazusa | View CDS |
|
Signature Domain? help Back to Top |
 |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | zf-CCCH | 29.1 | 1.7e-09 | 207 | 228 | 5 | 26 |
--SGGGGTS--TTTTT-SS-SS CS
zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26
C ++ ++G Ck+G++C F H+
Lj0g3v0261659.1 207 DCEYYVKNGRCKFGSSCLFKHP 228
7********************8 PP
|
2 | zf-CCCH | 29.4 | 1.4e-09 | 237 | 259 | 3 | 25 |
S---SGGGGTS--TTTTT-SS-S CS
zf-CCCH 3 telCrffartGtCkyGdrCkFaH 25
te+C++++r+G Cky C+++H
Lj0g3v0261659.1 237 TEICKNYQRFGVCKYRKACRYIH 259
9********************** PP
|
Protein Features
? help Back to Top |
 |
Database |
Entry ID |
E-value |
Start |
End |
InterPro ID |
Description |
SuperFamily | SSF90229 | 2.49E-6 | 201 | 231 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 4.7E-4 | 202 | 229 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.136 | 203 | 230 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 7.6E-7 | 207 | 228 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 2.1E-5 | 208 | 231 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.235 | 234 | 262 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.0029 | 234 | 261 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 7.33E-6 | 236 | 261 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 4.0E-6 | 237 | 261 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 2.8E-5 | 237 | 259 | IPR000571 | Zinc finger, CCCH-type |
Sequence ? help Back to Top |
Protein Sequence Length: 279 aa
Download sequence Send
to blast |
MKEKLLFIWD GSHCTTTTFD LPTQHNKKIV FKDLNKVWDE YANLMLKTLC WLTILHIRHC 60 LILHTTFFLH TCKSWKRDDN SLGEGGQLMM FLDELVNVVD VREYVKTISF GQPNINEQDK 120 YWGCYKNVVY EVMNKTGAEE SSESKSAAEV SNGEDPQQQQ LGFEPSTLAH SQWSDLNHAT 180 EDTLDDGSKN VNEEKRSGRT PHYPLTDCEY YVKNGRCKFG SSCLFKHPIK ENPGEPTEIC 240 KNYQRFGVCK YRKACRYIHT RGKSSERSLN NMSVEENYS
|