PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Cis-element |

Regulation |

Orthologous Group |

Basic Information? help Back to Top

TF ID

Lj0g3v0259039.1

Organism

Lotus japonicus

Taxonomic ID

34305

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus

Family

Trihelix

Protein Properties

Length: 436aa MW: 48666.1 Da PI: 9.8752

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Lj0g3v0259039.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	30.5	9.7e-10	224	278	22	76
trihelix 22 rrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsess 76 rgk ++ + +ev++++r++g++r +k+ kw+n+ ++++k+ e+e++++ ++ Lj0g3v0259039.1 224 TRGKTRADKDREVADFLRRHGVNRDAKTAGTKWDNMLGEFRKVYEWERGGERDHI 278 3678999999**************************************9965554 PP

Sequence ? help Back to Top
Protein Sequence Length: 436 aa Download sequence Send to blast
MGDKGDTSKK QPQQQQTQSH LHQQQQQQIS SSPQATRDEC IPEGRPIHPV VVVSGGSPFI 60 SSPLYVPSGA SSSPFEQQFE TLNSKRPRYS GQWKLLPSPS PPQQQKQPQM AMLPVESSPS 120 PQKQQQPQTH TAAAASSSDT TSSPSHSPAP LLSVGSGQEG NNKQEGEQVH QQLRKGKYVS 180 PVWKPNEMLW LARAWKDQYQ GGSDGSTSSR AEQQQQAEFG IGITRGKTRA DKDREVADFL 240 RRHGVNRDAK TAGTKWDNML GEFRKVYEWE RGGERDHIGK SYFRLSPYER KLHRLPASFD 300 EEVFEELSQF MGSRMRSSTH GRAGSSFGDE ARIRPLPPPP RPFKEDEMTP FSGRTKQISM 360 TSGGDQAFFH GHRGSSFLGL DTLLDIPSPS SSSSCKELRR IGKIRMTWEE SVSLWGEEGE 420 IHRGRVRLQG LSFLNA

Sequence ? help Back to Top

Protein Sequence Length: 436 aa Download sequence Send to blast

MGDKGDTSKK QPQQQQTQSH LHQQQQQQIS SSPQATRDEC IPEGRPIHPV VVVSGGSPFI  60
SSPLYVPSGA SSSPFEQQFE TLNSKRPRYS GQWKLLPSPS PPQQQKQPQM AMLPVESSPS  120
PQKQQQPQTH TAAAASSSDT TSSPSHSPAP LLSVGSGQEG NNKQEGEQVH QQLRKGKYVS  180
PVWKPNEMLW LARAWKDQYQ GGSDGSTSSR AEQQQQAEFG IGITRGKTRA DKDREVADFL  240
RRHGVNRDAK TAGTKWDNML GEFRKVYEWE RGGERDHIGK SYFRLSPYER KLHRLPASFD  300
EEVFEELSQF MGSRMRSSTH GRAGSSFGDE ARIRPLPPPP RPFKEDEMTP FSGRTKQISM  360
TSGGDQAFFH GHRGSSFLGL DTLLDIPSPS SSSSCKELRR IGKIRMTWEE SVSLWGEEGE  420
IHRGRVRLQG LSFLNA

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Lj0g3v0259039.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027357297.1	0.0	uncharacterized protein LOC113866685
TrEMBL	A0A394DDM6	1e-180	A0A394DDM6_LUPAN; Uncharacterized protein
STRING	XP_007152366.1	1e-178	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF11857	28	31

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33550.1	4e-08	Trihelix family protein