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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lj0g3v0256549.3 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
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Family | MYB_related | ||||||||
Protein Properties | Length: 720aa MW: 81258 Da PI: 8.7734 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 32.6 | 1.9e-10 | 664 | 712 | 2 | 47 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 ++W++ E ++ av+++G+g+Wk+I + k Rt k++k++w+++ Lj0g3v0256549.3 664 KKWSEVEVATFLSAVEKFGPGQWKLIENFHKstfKDRTNKDLKDKWRNL 712 69*********************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF52540 | 3.1E-66 | 35 | 397 | IPR027417 | P-loop containing nucleoside triphosphate hydrolase |
Gene3D | G3DSA:3.40.850.10 | 1.9E-65 | 37 | 392 | IPR001752 | Kinesin motor domain |
SMART | SM00129 | 6.3E-19 | 40 | 405 | IPR001752 | Kinesin motor domain |
PROSITE profile | PS50067 | 53.057 | 42 | 397 | IPR001752 | Kinesin motor domain |
Pfam | PF00225 | 1.7E-51 | 104 | 389 | IPR001752 | Kinesin motor domain |
PRINTS | PR00380 | 3.7E-16 | 148 | 169 | IPR001752 | Kinesin motor domain |
PRINTS | PR00380 | 3.7E-16 | 258 | 275 | IPR001752 | Kinesin motor domain |
PRINTS | PR00380 | 3.7E-16 | 292 | 310 | IPR001752 | Kinesin motor domain |
PRINTS | PR00380 | 3.7E-16 | 347 | 368 | IPR001752 | Kinesin motor domain |
Gene3D | G3DSA:1.10.10.60 | 1.8E-11 | 659 | 716 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.94E-12 | 660 | 714 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 10.12 | 661 | 717 | IPR017930 | Myb domain |
SMART | SM00717 | 3.7E-6 | 662 | 715 | IPR001005 | SANT/Myb domain |
CDD | cd11660 | 6.64E-14 | 664 | 714 | No hit | No description |
Pfam | PF00249 | 4.3E-8 | 664 | 712 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0007018 | Biological Process | microtubule-based movement | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003777 | Molecular Function | microtubule motor activity | ||||
GO:0005524 | Molecular Function | ATP binding | ||||
GO:0008017 | Molecular Function | microtubule binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 720 aa Download sequence Send to blast |
MDDPNASPHT VTGRNPRREA SDEVAPLPHE AQTPSTSQEK ESLNVFLRIR PIPILSQALR 60 ARPKVAPAWP KKPMRKNIPR PKKKSTAVCL SVQDSQSVTL STPSSLQVSK RIESVTYGGF 120 SHVFSSDSSQ SLVYDRMVRP MVDEFLKGRS GMLAALGPSG SGKTHTVFGT PRDPGMVPLA 180 LRHIFNETEP SRSYYLSIFE IYTERGKTEK LLDLFPNGNE LSMHQSTVNG LQEVLISNAE 240 QADSLITKAM LKRATAMTNT NSQSSRSQCI ISIHDVPQKC KGVVNSKSNG AVLTIIDLAG 300 SEREKRTGNQ GTRLLESNFI NNTLMVFGLC LRSLLEHQKN PKKPLQKHFQ SSMLTRYLRD 360 YLEVRKRMAL ILTAKSGEDD YLDTSYLLRQ GSPYMEIRYN VVEAPNMVPS KRHYQASIMD 420 NVDPSPSSEQ KRVRVVSQHT VQNEKKDVEE CNTYKEDAST VCKLDACDDS ERSHTIFKNF 480 AKVIWSCLKQ NNSKLKAVER EYEKVKESLQ AVEKEYEKVK ESLEDEKKKN IELENRLIEL 540 KKTMHAKSSS DNILDQLDEL TLGTSCIEEV DPDSEKWEVS ISSSSKPEHN EASKKTMHAK 600 SSSDNILDQL DELTLGTSCI EEVDPDSEKW EVSISSSSKP EHNEASKVDT ATSDPVLQLR 660 RPTKKWSEVE VATFLSAVEK FGPGQWKLIE NFHKSTFKDR TNKDLKDKWR NLTKCRKKKA |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6nje_A | 7e-28 | 120 | 384 | 69 | 334 | Kinesin-like protein KIF22 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 70 | 83 | KKPMRKNIPRPKKK |
2 | 705 | 717 | KDKWRNLTKCRKK |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lj0g3v0256549.3 |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006581156.1 | 0.0 | kinesin-like protein KIN-6 isoform X1 | ||||
Refseq | XP_006581157.1 | 0.0 | kinesin-like protein KIN-6 isoform X2 | ||||
Refseq | XP_029130660.1 | 0.0 | kinesin-like protein KIN-6 isoform X2 | ||||
TrEMBL | A0A0R0JAS1 | 0.0 | A0A0R0JAS1_SOYBN; Kinesin-like protein | ||||
STRING | GLYMA06G02600.2 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF10487 | 2 | 2 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G72650.1 | 2e-08 | TRF-like 6 |