PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj0g3v0256549.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family MYB_related
Protein Properties Length: 667aa    MW: 75441.8 Da    PI: 9.4984
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj0g3v0256549.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding32.71.7e-10611659247
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 
                      ++W++ E   ++ av+++G+g+Wk+I +      k Rt k++k++w+++
  Lj0g3v0256549.1 611 KKWSEVEVATFLSAVEKFGPGQWKLIENFHKstfKDRTNKDLKDKWRNL 659
                      69*********************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF525402.53E-6635397IPR027417P-loop containing nucleoside triphosphate hydrolase
Gene3DG3DSA:3.40.850.101.6E-6537392IPR001752Kinesin motor domain
SMARTSM001296.3E-1940405IPR001752Kinesin motor domain
PROSITE profilePS5006753.05742397IPR001752Kinesin motor domain
PfamPF002251.5E-51104389IPR001752Kinesin motor domain
PRINTSPR003802.8E-16148169IPR001752Kinesin motor domain
PRINTSPR003802.8E-16258275IPR001752Kinesin motor domain
PRINTSPR003802.8E-16292310IPR001752Kinesin motor domain
PRINTSPR003802.8E-16347368IPR001752Kinesin motor domain
Gene3DG3DSA:1.10.10.601.6E-11606663IPR009057Homeodomain-like
SuperFamilySSF466891.79E-12607661IPR009057Homeodomain-like
PROSITE profilePS5129410.12608664IPR017930Myb domain
SMARTSM007173.7E-6609662IPR001005SANT/Myb domain
CDDcd116605.56E-14611661No hitNo description
PfamPF002493.9E-8611659IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007018Biological Processmicrotubule-based movement
GO:0003677Molecular FunctionDNA binding
GO:0003777Molecular Functionmicrotubule motor activity
GO:0005524Molecular FunctionATP binding
GO:0008017Molecular Functionmicrotubule binding
Sequence ? help Back to Top
Protein Sequence    Length: 667 aa     Download sequence    Send to blast
MDDPNASPHT VTGRNPRREA SDEVAPLPHE AQTPSTSQEK ESLNVFLRIR PIPILSQALR  60
ARPKVAPAWP KKPMRKNIPR PKKKSTAVCL SVQDSQSVTL STPSSLQVSK RIESVTYGGF  120
SHVFSSDSSQ SLVYDRMVRP MVDEFLKGRS GMLAALGPSG SGKTHTVFGT PRDPGMVPLA  180
LRHIFNETEP SRSYYLSIFE IYTERGKTEK LLDLFPNGNE LSMHQSTVNG LQEVLISNAE  240
QADSLITKAM LKRATAMTNT NSQSSRSQCI ISIHDVPQKC KGVVNSKSNG AVLTIIDLAG  300
SEREKRTGNQ GTRLLESNFI NNTLMVFGLC LRSLLEHQKN PKKPLQKHFQ SSMLTRYLRD  360
YLEVRKRMAL ILTAKSGEDD YLDTSYLLRQ GSPYMEIRYN VVEAPNMVPS KRHYQASIMD  420
NVDPSPSSEQ KRVRVVSQHT VQNEKKDVEE CNTYKEDAST VCKLDACDDS ERSHTIFKNF  480
AKVIWSCLKQ NNSKLKAVER EYEKVKESLQ AVEKEYEKVK ESLEDEKKKN IELENRLIEL  540
KKTMHAKSSS DNILDQLDEL TLGTSCIEEV DPDSEKWEVS ISSSSKPEHN EASKVDTATS  600
DPVLQLRRPT KKWSEVEVAT FLSAVEKFGP GQWKLIENFH KSTFKDRTNK DLKDKWRNLT  660
KCRKKKA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6nje_A5e-2812038469334Kinesin-like protein KIF22
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17083KKPMRKNIPRPKKK
2652664KDKWRNLTKCRKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj0g3v0256549.1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027354591.10.0kinesin-like protein KIN-6
TrEMBLA0A0R0JAS10.0A0A0R0JAS1_SOYBN; Kinesin-like protein
STRINGGLYMA06G02600.20.0(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72650.11e-08TRF-like 6