PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj0g3v0250849.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family TALE
Protein Properties Length: 655aa    MW: 71527.6 Da    PI: 7.0619
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj0g3v0250849.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox29.41.4e-093674041954
                      HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
         Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                      Fe   ++yp+ +++  LAk++gLt +qV++WF N R +
  Lj0g3v0250849.1 367 FEHflHPYPKDSDKHMLAKQTGLTRSQVSNWFINARVR 404
                      564459******************************88 PP
2BELL120.11e-38231302172
             BELL   1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                      erqe+q+kkakL+++l+eV++rY+qy++q+q+vis Fe+vag+gsa+ Yt+lAl++iS++FrcLkdai++qi
  Lj0g3v0250849.1 231 ERQEIQMKKAKLINMLDEVEQRYRQYHNQMQVVISMFEQVAGMGSARTYTALALQTISKQFRCLKDAITGQI 302
                      79*********************************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005744.4E-57161300IPR006563POX domain
PfamPF075264.0E-46166299IPR006563POX domain
PROSITE profilePS5007112.195345408IPR001356Homeobox domain
SMARTSM003895.3E-9348412IPR001356Homeobox domain
CDDcd000868.97E-12348409No hitNo description
SuperFamilySSF466897.27E-17349415IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.608.5E-29351414IPR009057Homeodomain-like
PfamPF059202.7E-18365404IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009610Biological Processresponse to symbiotic fungus
GO:0009737Biological Processresponse to abscisic acid
GO:0010197Biological Processpolar nucleus fusion
GO:0010201Biological Processresponse to continuous far red light stimulus by the high-irradiance response system
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0003677Molecular FunctionDNA binding
GO:0042803Molecular Functionprotein homodimerization activity
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 655 aa     Download sequence    Send to blast
MATYFHTNSE IQGGADGLQT LLLMNPGGYV QYSDTPPPPP PPQQHGGNYM FLNSAAAANS  60
SFVQQGTSHA PQQFVGVPLS AASGEPPGQA PHEVSALHGF PHRMQYNPWN GADQNAAARE  120
ASRASQGLSL SLQSQAPDAD ARVSGGGSSS TASGVTNGGV SGIQSVLFGS KFLKATHELL  180
EEVVNVNGGI KVDSAKKKVV GESSTAGSGD GSVGGDQGSL KRSSELLSTT ERQEIQMKKA  240
KLINMLDEVE QRYRQYHNQM QVVISMFEQV AGMGSARTYT ALALQTISKQ FRCLKDAITG  300
QIRAANKSLG EEDCFGGKIE GSRLKYVDHH LRQQRAIQQL GMMNHNAWRP QRGLPERSVS  360
VLRAWLFEHF LHPYPKDSDK HMLAKQTGLT RSQVSNWFIN ARVRLWKPMV EEMYVEEMKE  420
NERNESEDKT SKSGEESPAM KIQERGPASE TESKSFNSNQ DVAKNQNTPI VSVSTPSTSP  480
VGGNVRNQSA FSFMQELDGL TQGSPKRTRN HEILMSPNRV SSINMDIKSN ETNNEALSRD  540
GYSFIGNQTN FIGGFGQYPM EEIGRFDAEQ FTPRFSGNGV SLTLGLPHCE TISGTHHQTF  600
IPNQNIPIGR RLDISEPNEF GAMNTSNSHS SAAFESINMQ NPKRFAAQLL PDFVA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3k2a_A4e-16354412563Homeobox protein Meis2
3k2a_B4e-16354412563Homeobox protein Meis2
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Lja.209730.0root
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj0g3v0250849.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003535815.10.0BEL1-like homeodomain protein 1
RefseqXP_006588872.10.0BEL1-like homeodomain protein 1
RefseqXP_014618534.10.0BEL1-like homeodomain protein 1
RefseqXP_014618535.10.0BEL1-like homeodomain protein 1
RefseqXP_014618536.10.0BEL1-like homeodomain protein 1
RefseqXP_028186139.10.0BEL1-like homeodomain protein 1
RefseqXP_028186140.10.0BEL1-like homeodomain protein 1
RefseqXP_028186141.10.0BEL1-like homeodomain protein 1
RefseqXP_028186142.10.0BEL1-like homeodomain protein 1
SwissprotQ9SJ561e-173BLH1_ARATH; BEL1-like homeodomain protein 1
TrEMBLA0A0K2CTJ90.0A0A0K2CTJ9_SOYBN; Homeodomain/HOMEOBOX transcription factor (Fragment)
TrEMBLA0A445IJM40.0A0A445IJM4_GLYSO; BEL1-like homeodomain protein 1 isoform A
TrEMBLI1L9K60.0I1L9K6_SOYBN; Uncharacterized protein
STRINGGLYMA10G10040.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF16273492
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G35940.31e-147BEL1-like homeodomain 1
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]