PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj0g3v0246999.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family bZIP
Protein Properties Length: 201aa    MW: 23194.9 Da    PI: 5.3417
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj0g3v0246999.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_144.63.1e-1486142561
                      CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
           bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklks 61 
                      ++ rr+++NRe+ArrsR RK++ ++eL   v  L +eN+ L ++l++ ++  ++  +
  Lj0g3v0246999.1  86 RKHRRMISNRESARRSRMRKQKHLDELWSQVVRLRTENHNLVDRLNHVSESHDRALQ 142
                      688***************************************999999887666555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003381.6E-1482146IPR004827Basic-leucine zipper domain
PROSITE profilePS5021710.55384147IPR004827Basic-leucine zipper domain
PfamPF001703.4E-1286144IPR004827Basic-leucine zipper domain
SuperFamilySSF579598.13E-1386135No hitNo description
Gene3DG3DSA:1.20.5.1701.0E-1186158No hitNo description
CDDcd147021.09E-1987138No hitNo description
PROSITE patternPS00036089104IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 201 aa     Download sequence    Send to blast
MVPFPSEIRG VQYLTPENQF LAPPNFGLQQ SDDIPNLYLN SLLSTLPNCQ FPSLGNEFAP  60
PNPCLSSNST TSDEADELQF RVIDERKHRR MISNRESARR SRMRKQKHLD ELWSQVVRLR  120
TENHNLVDRL NHVSESHDRA LQENARLKEE TSDLRRMVAD MQIGNSFACT MRDFEEIPCN  180
TSQLKEDSSN QSIIPSDLVH E
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
198105RRSRMRKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in somatic embryogenesis. Acts as positive regulator of BHLH109. {ECO:0000269|PubMed:26973252}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00647PBMTransfer from LOC_Os02g49560Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj0g3v0246999.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003518809.11e-104basic leucine zipper 43
RefseqXP_028204287.11e-104basic leucine zipper 43-like
SwissprotQ9FMC23e-36BZP43_ARATH; Basic leucine zipper 43
TrEMBLA0A445LN251e-103A0A445LN25_GLYSO; Basic leucine zipper 43
TrEMBLK7K7Z21e-103K7K7Z2_SOYBN; Uncharacterized protein
STRINGGLYMA02G13960.21e-104(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF16043399
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G30530.14e-48basic leucine-zipper 42
Publications ? help Back to Top
  1. Nowak K,Gaj MD
    Stress-related function of bHLH109 in somatic embryo induction in Arabidopsis.
    J. Plant Physiol., 2016. 193: p. 119-26
    [PMID:26973252]
  2. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]