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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lj0g3v0242739.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
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Family | C3H | ||||||||
Protein Properties | Length: 347aa MW: 38422 Da PI: 7.4271 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 17.7 | 6.2e-06 | 115 | 135 | 5 | 26 |
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 C +f++ G C Gd C FaHg Lj0g3v0242739.1 115 SCADFHK-GSCMKGDACEFAHG 135 69*****.*************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00356 | 0.018 | 110 | 136 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 11.432 | 111 | 137 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 2.0E-4 | 116 | 137 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 14 | 145 | 168 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 6.643 | 145 | 169 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 347 aa Download sequence Send to blast |
MMLRANPTVH VPPWPMVNDP TTEIFSPLTA TNADYDHSPF YLQEALEQYA PSDADSDPGR 60 DSADVYSFDQ FRMFEFKVRN CARGRSHDWT ECPYAHPGEK ARRRDPRKYH YSGASCADFH 120 KGSCMKGDAC EFAHGVFECW LHPARYRTQP CKDGTSCRRR VCFFAHTPEQ LRVLPQHSPR 180 PRSVAFEFQS ACAKKLPASS SSSHGSVSPP AETATPPMSP VAQSLCSSSV GVSEMVASLC 240 NLQLGRVKSL PSSWNMQMGS PRFGSPRGPV IRPGFCSLPS TPTQVPPGRG SVNYFDLWDQ 300 RCEEEEPVME RVESGRGIRA KMFEKLSKEN SLDSSGSGQE DGAPNVG |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Lja.13291 | 0.0 | cell culture| protoplast| root |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lj0g3v0242739.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027341298.1 | 1e-173 | zinc finger CCCH domain-containing protein 20-like | ||||
Swissprot | O82199 | 1e-107 | C3H20_ARATH; Zinc finger CCCH domain-containing protein 20 | ||||
TrEMBL | A0A1S2YE68 | 1e-167 | A0A1S2YE68_CICAR; zinc finger CCCH domain-containing protein 20 | ||||
STRING | XP_004503514.1 | 1e-168 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2056 | 31 | 76 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G19810.1 | 3e-99 | C3H family protein |
Publications ? help Back to Top | |||
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