PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lj0g3v0234069.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
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Family | bHLH | ||||||||
Protein Properties | Length: 377aa MW: 41438.9 Da PI: 6.83 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 15.3 | 3.7e-05 | 264 | 302 | 12 | 55 |
HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 R +++ ++++ L++l+ + +K + a++L +A+ YIk Lq Lj0g3v0234069.2 264 RKEKLGDRIAALQQLIAPF-----GKTDTASVLMEAIGYIKFLQ 302 7788999**********98.....8******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 11.515 | 252 | 301 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 5.45E-5 | 262 | 306 | No hit | No description |
SuperFamily | SSF47459 | 1.22E-10 | 262 | 316 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 3.0E-8 | 266 | 309 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 377 aa Download sequence Send to blast |
MESTNNNLQY HHPQHPLEAS SLSPPSSYAH VGGTNHSWTP NITLNAGSNF NQNFQEADPT 60 SRESMIQDLG YHYQWASKEE ISIFPPKFSE ILNTPSTAQM KSEQRDMNEK KLLHSAQSYY 120 PNLSGTTSRG NFSQIYPSIS ISPTYSTSVS SSFGMSTQSL DLLTPTGSFS AGLSQHSQDD 180 HDLGAFSDHN LSFSLHHMQH PNHRSSCSNT TNIQQPSSHF TNGGAEAKRP GTLMESMVCE 240 SQTASKKSRL DSSRPPCPPP LKVRKEKLGD RIAALQQLIA PFGKTDTASV LMEAIGYIKF 300 LQGQVETLSV PYMKKPSQNH TNRTMQGGTA TDEADGETTQ DLRSRGLCLV PLSCMSYIAG 360 DCIISEVWQQ PNFGRAT |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lj0g3v0234069.2 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019438018.1 | 1e-127 | PREDICTED: transcription factor bHLH110-like | ||||
Swissprot | Q9SFZ3 | 8e-54 | BH110_ARATH; Transcription factor bHLH110 | ||||
TrEMBL | A0A1J7I8A0 | 1e-125 | A0A1J7I8A0_LUPAN; Uncharacterized protein | ||||
STRING | XP_004500989.1 | 5e-92 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4045 | 32 | 54 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G27660.1 | 1e-47 | bHLH family protein |
Publications ? help Back to Top | |||
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