PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lj0g3v0234069.1

Organism

Lotus japonicus

Taxonomic ID

34305

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus

Family

bHLH

Protein Properties

Length: 376aa MW: 41310.8 Da PI: 6.83

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Lj0g3v0234069.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	15.3	3.7e-05	263	301	12	55
HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 R +++ ++++ L++l+ + +K + a++L +A+ YIk Lq Lj0g3v0234069.1 263 RKEKLGDRIAALQQLIAPF-----GKTDTASVLMEAIGYIKFLQ 301 7788999********98.....8****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	11.515	251	300	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	5.43E-5	261	305	No hit	No description
SuperFamily	SSF47459	1.22E-10	261	315	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	3.0E-8	265	308	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 376 aa Download sequence Send to blast
MESTNNNLQY HHPQHPLEAS SLSPPSSYAH VGGTNHSWTP NITLNAGSNF NQNFQEADPT 60 SRESMIQDLG YHYQWASKEE ISIFPPKFSE ILNTPSTAQM KSEQRDMNEK KLLHSAQSYY 120 PNLSGTTSRG NFSQIYPSIS ISPTYSTSVS SSFGMSTQSL DLLTPTGSFS AGLSQHSQDD 180 HDLGAFSDHN LSFSLHHMQH PNHRSSCSNT TNIQPSSHFT NGGAEAKRPG TLMESMVCES 240 QTASKKSRLD SSRPPCPPPL KVRKEKLGDR IAALQQLIAP FGKTDTASVL MEAIGYIKFL 300 QGQVETLSVP YMKKPSQNHT NRTMQGGTAT DEADGETTQD LRSRGLCLVP LSCMSYIAGD 360 CIISEVWQQP NFGRAT

Sequence ? help Back to Top

Protein Sequence Length: 376 aa Download sequence Send to blast

MESTNNNLQY HHPQHPLEAS SLSPPSSYAH VGGTNHSWTP NITLNAGSNF NQNFQEADPT  60
SRESMIQDLG YHYQWASKEE ISIFPPKFSE ILNTPSTAQM KSEQRDMNEK KLLHSAQSYY  120
PNLSGTTSRG NFSQIYPSIS ISPTYSTSVS SSFGMSTQSL DLLTPTGSFS AGLSQHSQDD  180
HDLGAFSDHN LSFSLHHMQH PNHRSSCSNT TNIQPSSHFT NGGAEAKRPG TLMESMVCES  240
QTASKKSRLD SSRPPCPPPL KVRKEKLGDR IAALQQLIAP FGKTDTASVL MEAIGYIKFL  300
QGQVETLSVP YMKKPSQNHT NRTMQGGTAT DEADGETTQD LRSRGLCLVP LSCMSYIAGD  360
CIISEVWQQP NFGRAT

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Lj0g3v0234069.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019438018.1	1e-127	PREDICTED: transcription factor bHLH110-like
Swissprot	Q9SFZ3	8e-54	BH110_ARATH; Transcription factor bHLH110
TrEMBL	A0A1J7I8A0	1e-126	A0A1J7I8A0_LUPAN; Uncharacterized protein
STRING	XP_004500989.1	3e-92	(Cicer arietinum)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G27660.1	1e-47	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281]