PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lj0g3v0233949.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
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Family | Dof | ||||||||
Protein Properties | Length: 222aa MW: 23841.4 Da PI: 8.7894 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 122.8 | 1.2e-38 | 20 | 80 | 2 | 62 |
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 ++++lkcprCds ntkfCyynny+lsqPr++Ck+C+ryWtkGG+lrn+PvGgg+rk k+s Lj0g3v0233949.1 20 EQQQLKCPRCDSINTKFCYYNNYNLSQPRHYCKNCKRYWTKGGSLRNIPVGGGSRKTTKRS 80 7899****************************************************98876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 3.0E-25 | 13 | 72 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 1.1E-32 | 22 | 78 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 28.658 | 24 | 78 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 26 | 62 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 222 aa Download sequence Send to blast |
MQDPTAAFQQ PMKPQFPEQE QQQLKCPRCD SINTKFCYYN NYNLSQPRHY CKNCKRYWTK 60 GGSLRNIPVG GGSRKTTKRS SSTSKRSSSS SSSPSPSISS ATNPAATVSE PTRVHTDPVG 120 GGSLSFSSLL ASNGHFGSLF EGMNSSMSGL KMVKMGEFGE NVMGSDPVVK PGSGSDPELE 180 MQSNGSSECF LGMRNGDSSS WNNGGGYGWS DLAMYTPGSS FQ |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Lja.14136 | 0.0 | cell culture| flower| root |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lj0g3v0233949.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | DQ857252 | 8e-49 | DQ857252.1 Glycine max Dof1 mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027336749.1 | 2e-94 | dof zinc finger protein DOF3.1-like | ||||
Swissprot | O82155 | 2e-42 | DOF17_ARATH; Dof zinc finger protein DOF1.7 | ||||
TrEMBL | A0A0B5JL37 | 6e-87 | A0A0B5JL37_CAJCA; Dof protein | ||||
STRING | XP_007150543.1 | 7e-86 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF6181 | 33 | 51 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G51700.1 | 2e-35 | DOF zinc finger protein 1 |
Publications ? help Back to Top | |||
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