PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj0g3v0231229.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family C2H2
Protein Properties Length: 266aa    MW: 29845.9 Da    PI: 8.7384
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj0g3v0231229.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H222.72.5e-07153174223
                      EETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   2 kCpdCgksFsrksnLkrHirtH 23 
                       C++Cgk F+r  nL+ H+r H
  Lj0g3v0231229.1 153 FCEICGKGFRRDANLRMHMRAH 174
                      6*******************99 PP
2zf-C2H213.40.00023238262123
                      EEETTTT..EEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCpdCg..ksFsrksnLkrHirtH 23 
                      y C  C+  ksFs  s+Lk+H+r +
  Lj0g3v0231229.1 238 YACDRCHkrKSFSVLSDLKSHMRHC 262
                      89*********************87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.46E-6149175No hitNo description
SMARTSM003550.0017152174IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015712.03152179IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.602.6E-6154176IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280154174IPR007087Zinc finger, C2H2
SMARTSM0035538200233IPR015880Zinc finger, C2H2-like
SMARTSM0035517238261IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 266 aa     Download sequence    Send to blast
MSNLDPDSQA TTTRKLHPHE DPNFTAADPH VPLRNLFLVR TTMDSLHHFL SQSINTNSPL  60
AADQITAVSN QIVSALHQTV VNGAALVSCS QNLTSAAGAS VLPPTISIPE KSVKQTLDSK  120
VEFAEDDTVE GRDGDWEIVE LDAVELLAEH IHFCEICGKG FRRDANLRMH MRAHGNQFKT  180
AEALAKPLVE DAGGQRERRF SCPFKGCNRN KRHRRFRALK SVVCVRNHFK RSHCPKMYAC  240
DRCHKRKSFS VLSDLKSHMR HCSESR
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Lja.137760.0protoplast| root
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj0g3v0231229.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0073109e-43AP007310.2 Lotus japonicus genomic DNA, chromosome 3, clone: LjT25F10, TM1459, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004502416.11e-119protein SENSITIVE TO PROTON RHIZOTOXICITY 1-like isoform X1
RefseqXP_004502417.11e-120protein SENSITIVE TO PROTON RHIZOTOXICITY 1-like isoform X2
TrEMBLA0A1S2YBK81e-118A0A1S2YBK8_CICAR; protein SENSITIVE TO PROTON RHIZOTOXICITY 1-like isoform X1
TrEMBLA0A1S2YCQ81e-119A0A1S2YCQ8_CICAR; protein SENSITIVE TO PROTON RHIZOTOXICITY 1-like isoform X2
STRINGXP_004502416.11e-118(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF68553150
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G34370.32e-57C2H2 family protein